A2.2. Cell Structure Flashcards

(44 cards)

1
Q

What are the advantages of freeze fracture electron microscopy?

A

Freeze fracture microscopy provides a planar view of membrane structure with high resolution details. The distribution and organization of membrane proteins and other molecules is rendered visible.

A2.2.3- Developments in microscopy

Include the advantages of electron microscopy, freeze fracture, cryogenic electron microscopy, and the use of fluorescent stains and immunofluorescence in light microscopy.

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2
Q

Describe one use of fluorescent microscopy

A

Immunofluorescence uses antibodies chemically labelled with fluorescent dyes which bind to & mark target cells which is useful in cancer diagnosis.

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3
Q

Which cell structures are found in both animal and plant cells?

A

Cytoplasm, genetic material and plasma membrane.

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4
Q

Describe features of prokaryotic cell structure

A

Prokaryotes are smaller than eukaryotes, about the size of organelles of eukaryotic cells. Prokaryotes contain no true nucleus, and instead have a nucleoid DNA loop part of their circular DNA structure. A prokaryotic cell wall is made from peptidoglycan. It has 70s ribosomes for protein synthesis.

A2.2.5- Prokaryote cell structure
Include the cell components: Cell wall, plasma membrane, cytoplasm, naked DNA in a loop and 70S ribosomes. The type of prokaryotic cell structure required is that of Gram positive eubacteria such as Bacillus and Satphylococcus. Students should appreciate that prokaryotic cell structure varies. However students are not required to know details of the variations such as the lack of cell walls in phytoplasmas and mycoplasmas.

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5
Q

What are some examples of unicellular organisms?

A

The paramecium and the chlorella

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6
Q

Draw a eukaryotic cell (plant cell)

Reference A2.2 Slide deck 2, slide 17

A

.refer to this link for drawing:
https://ib.bioninja.com.au/standard-level/topic-2-cells/23-eukaryotic-cells.html

A2.2.6- Eukaryotic cell structure

Students should be familiar with features common to eukaryotic cells: A plasma membrane enclosing a compartmentalised cytoplasm with 80S ribosomes; a nucleus with chromosomes made of DNA bound to histones, contained in a double membrane with pores; membrane bound cytoplasmic organelles including mitochondria, endoplasmic reticulum, Golgi apparatus and a variety of vesicles or vacuoles including lysosomes; and a cytoskeleton of microtubules and microfilaments.

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7
Q

Compare and contrast the structure and function of cilia and flagella, with examples

A

Both are made up of microtubules.
Both are microtubules, and comprise a ring of 9 microtubule doublets surrounding a central pair of microtubules (9+2 arrangement). Both contain a basal body at the base, which is identical in structure to centrioles that anchor the cilia and flagella. Contrasting cilia and flagella, while flagella can be singular and long, cilia are shorter but numerous. Cilia can be found in certain protists such as the Euglena and Paramecium. They can also be found in the epithelium of the respiratory system to move mucus across the cell surface or in the oviduct to help move ovum from oavry to uterus. Flagella occur single as small motile cells such as sperm to aid movement.

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8
Q

Compare and contrast eukaryotic cells with prokaryotic cells

A

Both prokaryotic and eukaryotic cells have a plasma membrane, ribosomes and genetic material. Prokaryotic cells do not have a true nucleus while eukaryotic cells do. The prokaryotic cell is made of peptidoglycan while the eukaryotic cell wall for plants is made from cellulose. Prokaryotic cells mostly have 70s ribosomes while eukaryotic cells have 80s ribosomes.

A2.2.4- Structures common to cells in all living organisms

Typical cells have DNA as genetic material and a cytoplasm composed mainly of water, which is enclosed by a plasma membrane composed of lipids. Students should understand the reasons for these structures.

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9
Q

State the structure and function of the mitochondria, and where it can be found

A

The mitochondria is a double membraned organelle that is the site of aerobic respiration. The exterior is called the matrix and contains aqueous solution of metabolites and enzymes needed for the respiration process. The interior membrane is called the cristae and is folded. The mitochondria s found in all cells, and abundant in muscle and liver cells.

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10
Q

State structure function and location of ribosomes

A

Ribosomes consist of protein and RNA. Ribosomes are found anywhere in the plasma membrane, but can also be found within the mitochondria and chloroplast as 70s ribosomes. Ribosomes can also be bound to the rough endoplasmic reticulum. They are utilised as the site for protein synthesis in the translation process.

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11
Q

State the location, structure and function of the RER

A

The rough endoplasmic reticulum is a network of interconnected folded membranes. It touches the nuclear envelope. The RER has many metabolically active cells. The RER in particular has cisternae which are flattened membrane sacs. Vesicles are formed at its margins and pinch off. site of synthesis, folding & post-translational modification of secretory proteins, e.g. digestive enzymes

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12
Q

State the location, structure and function of the SER

A

The smooth ER manufactures lipids, phospholipids & steroids. In muscle cells, it stores calcium ions. Its structure consists of a branched network of tubular membranes. Not studded with ribosomes

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13
Q

State the location, structure and function of the Golgi apparatus

A

The Golgi Apparatus synthesizes hormones and enzymes which it packages into vesicles (GA, SHE, PIV acronym). Consists of stack-like collection of flattened membranous sacs (cisternae)
One side of the membranes is formed by fusion of membranes of vesicles from ER. Opposite side is formed from swellings at the margin that pinches off. Abundant in metabolically active cells, i.e. secretory cells. It has no specific area within the cell, but it is encased within the plasma membrane.

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14
Q

State the location, structure and function of lysosomes.

A

Lysosomes are temporary vacuoles, hence they are not found in plant cells that already have a large central vacuole. Lysosomes contain hydrolytic enzymes to break down foreign particles through phagocytosis. They can escape into the cell membrane. They can self digest, and are involved in programmed cell death.

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15
Q

What makes up the cytoplasm?

A

Cytoskeleton is a network of fibers extending throughout the cytoplasm
It is made up of microtubules, microfilaments and intermediate filaments (FYI). Microtubules 1) provide mechanical support and maintain cell shape. 2) They also control the movement of chromosomes in cell division, guide the movement of secretory vesicles from Golgi apparatus to plasma membrane. Microfilaments- Each filament consists of a twisted double chain of actin (globular proteins)
1) It resists tension to maintain & change cell shape, involved in cleavage furrow formation during cell division and 2)regulates cell motility particularly during muscle contraction

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16
Q

What is the function of the centriole?

A

It consists of 9 sets of three microtubules each arranged in a short, hollow cylinder.
Two centrioles occur at right angles outside the nucleus, forming the centrosome.

Centrioles replicate & grow spindle fibres to organize the movement of chromosomes during nuclear division.

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17
Q

State the structure and function of chloroplasts.

A

Chloroplasts are membrane bound organelles. Thylakoids are loosely arranged in grana in the stroma (stack of coins).

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18
Q

Permanent vacuole

A

A fluid-filled space surrounded by a single membrane called tonoplast.
When filled with water, it pushes the cytoplasm against the cell wall, creating turgor pressure to maintain plant tissue rigidity.
Chemicals such as pigments (betalains), carbohydrates, fats & proteins can be stored.
The interior is slightly acidic (pH 5.0) contains hydrolase enzymes to break down waste material

19
Q

State location, structure and function of cell wall.

A

Found in the exterior of plant cells, not considered an organelle.
Made up of cellulose arranged in bundles called microfibrils.
Allows plant cells to develop high internal pressure due to water influx & remain turgid.

NOT an organelle.

20
Q

State location, structure and function of glycoproteins.

A

Large molecules of proteins to which sugar molecules (oligosaccharides) are bonded together.
Enable animal cells to adhere together and to a basement membrane to form tissues & organs.

21
Q

Is a fungus cell a prokaryotic and eukaryotic cell?

A

Eukaryotic organisms that obtain food by absorbing nutrients from the external environment.
Do not have chloroplasts, thus cannot photosynthesize.
Have a cell wall made of chitin.
Mostly multicellular, although some are unicellular (yeast).
Reproduces asexually by budding.

22
Q

What are some examples of exceptions to eukaryotic cell structure? Hint: Sieve tub element, Mucos, red blood cells

A

Atypical cells are multi-nucleate but not divided into distinct cells.
Examples: The mould Mucor in which the body consists of fine-like structures called hyphae, striated muscle fibres in the skeletal muscles.

Red blood cells do not have nucleus so that more haemoglobin can be packed within & can adopt a biconcave shape for larger surface area for the exchange of oxygen.

Sieve tubes are made up of narrow, elongated sieve tube elements connected end-to-end, which have no nucleus & organelles.
The end walls (sieve plates) are perforated. Each sieve tube is connected to a companion cell by strands of cytoplasm (plasmodesmata) that passes through narrow gaps (pits) in the walls. Companion cells – contain membrane-bound organelles such as mitochondria to provide ATP for the transport of sucrose along the phloem.

A2.2.9- Atypical cell structure in eukaryotes

Use numbers of of nuclei to illustrate one atypical cell structure in aseptate fungi hyphae, skeletal muscle, red blood cells, and phloem sieve tube elements.

23
Q

What is cell theory (key: 3 points)

A

Cell theory states that firstly, 1) Cells can only arise from pre-existing cells 2) Living organisms are composed of cells 3) Organisms consisting of only one cell carry out all functions of life in that cell’ cell perform life functions at some point in their existence

24
Q

What are the units of length in microscopy which we must remember?

A

1 mm= 1000 micrometres, 1 micrometre = 1000 nanometres

25
Distinguish between resolution and magnification.
Resolution is the ability to separate visually small objects that are very close together. However, magnification is just the amount of times larger an image is than the specimen.
26
List the features of cells that can be observed by electron microscopy that are not visible by the light microscope
The cell's ultrastructure- its individual organelles and plasma membrane.
27
State two problems that arise in electron microscopy because of the nature of an electron in relation to the living cell.
Firstly, it cause significant damage to biological specimens, especially living cells. The interaction of electrons with the sample can lead to ionization, molecular bond breakage, and other forms of radiation damage, which can kill or alter the cells. Secondly, the equirement for Vacuum Conditions. However, living cells cannot survive in a vacuum, as it leads to dehydration and collapse of the cell structure.
28
Describe cryogenic Microscopy and its advantages.
Technique--->Flash-freezing of cell, then exposes electrons to high resolution images, producing a 3D shape. Advantages--> Some materials such as biological molecules are not comaptible with high-vacuum conditions and high intensity electron beams. Hence advantages of CRYOGENIC EM, include- 1) There is no evaporation of water around the molecule as cryogenic EM uses frozen samples. 2) Specimen is not destroyed and is alive and frozen, all possible with a lower intensity electron beam.
29
Explain the method of freeze-fracture microscopy.
FIRSTLY, biological material i INSTANTLY FROZEN in LIQUID Nitrogen. Then, it is BROKEN UP IN A VACUUM. Secondlly, the EXPOSED SURFACE LOSES SOME ICE, hence being described as ETCHED. Thirdly, a CARBON REPLICA of surface is made, COATED with HEAVY METAL to strenghen before examination under an electron micrograph Lastly, resulting electron micrograph is produced by freeze etching. 1) FROZE< LIQUID NITROGEN, VACUUM 2) ETCHED 3) CARBON REPLICA, HEAVY METAL COATING. 4) FREEZE ETCHING PRODUCES FINAL PRODUCT
30
Describe the ADVANTAGES of feeze-fracture electron microscopy.
It provides a PLANAR VIEW OF THE MEMBRANE with VERY HIGH RESOLUTION DETAILS. Secondly, The DISTRIBUTION and organization of membrane proteins and other molecules are rendered visible. (Therefore, when we are shown an image where we can bsee the location and distribution of protein, it is a freeze fracture technique. )
31
Describe what cryogenic microscopy is often used for.
Cryogenic microscpy, where we flash freeze biological material without killing the specimen, is often used to reveal HOW PROTEINS FUNCTION, how they MALFUNCTION with disease and HOW to target them with drugs.
32
Describe some uses of cryogenic electron microscopy.
Used in X-Ray crystallography, the structure of DNA was discovered in this way by Rosalind Franklin.
33
Distiguish between cryogenic and flash freezing electron microscopy (not tested just for personal understanding)
Cryogenic electon microscopy uses flash-freezing methods while freeze fracture methods employ instant freezing in liquid nitrogen
34
Describe the techique of fluorescence microscopy (3m)
Fluorescent dyes absorb & then emit light at a longer wavelength. They can be used to bind to biomolecules (DNA, proteins) to reveal their cellular locations. There are two sets of filters, The FIRST SET filters the light BEFORE it reaches the specimen. It passes ONLY those wavelengths that excite the SPECIFICALLy chosen fluorescent dye. The SECOND SET of filters BLOCS OUT LIGHT and passes ONLY those wavelengths emitted WHEN THE FLUORESCENT DYE FLUORESCES. Dyed objects show up in bright colours on a dark background.
35
Applications of fluorescent microscipy?
. Firstly, Other dyes can be used with ANTIBODY molecules which then BIND SELECTIVELY to targeted biomolecules e.g. DNA showing the distribution in the cell. This is used to explin e.g. structure of cell's plasma membrane and mechanisms by which muscles contract. Secondly, Can be used in IMMUNOFLUORESCENCE. Immunofluorescence uses ANTIBODIES which are CHEMICALLY LABELLED with FLUORESCENT DYES to be visualised under a lught microscope. Antibodies ATTACH to AFFECTED CELLS AND DYES INDICATE WHICH CELLS ARE MARKED THIS WAY. This is used for CANCER DIAGNOSIS when the cancer is present only at a small sampe of tissue.
36
Describe the structure and function of the smooth-endoplasmic reticulum.
The smooth endoplasmic reticulum consists of a tubular membrane network that is branched. The smooth-endoplasmic reticulum manufactures lipids, phospholipids and steroids (acronym LPS). Furthermore, in muscle cells, the smooth endoplasmic reticulum stores calcium ions.
37
Describe the structure and function of microtubules and microfilaments in the eukaryotic cell.
Microtubules are straight, unbranched, thickest, hollow cylindrical fibres (25 nm in diameter). They are made up of tubulin (globular protein), capable of reassembling & dismantling Functions: control the movement of chromosomes in cell division, guide the movement of secretory vesicles from Golgi apparatus to plasma membrane Provide mechanical support, maintains cell shape. Microfilaments- each filament consists of a twisted double chain of actin (globular proteins) Function: resist tension to maintain & change cell shape, involved in cleavage furrow formation during cell division, regulates cell motility particularly during muscle contraction
38
Outline the roles of the lysosomes, the Golgi Apparatus and the endoplasmic reticulum in the eukaryotic cell (4 marks)
Lysosomes contains hydrolytic enzymes to breakdown foreign particles (phagocytosis) or worn out organelles (auto-phagy). They are also involved in programmed cell death. The golgi apparatus synthesizes hormones and enzymes which it packages into vesicles (GA, SHE, PIV acronym). Abundant in metabolically active cells, i.e. secretory cells. The rough endiplasmic reticulum synthesizes proteins, The RER has many metabolically active cells. Site of synthesis, folding & post-translational modification of secretory proteins, e.g. digestive enzymes. The SER is involved in synthesizing, lipids, phospholipids and steroids.
39
Outline how the electron microscope has increaded our knowledge of cell structure (2 marks)
40
Describe purpose of the large central vacuole in plant cells.
When filled with water, it pushes the cytoplasm against the cell wall, creating turgor pressure to maintain plant tissue rigidity. Chemicals such as pigments (betalains), carbohydrates, fats & proteins can be stored. The interior is slightly acidic (pH 5.0) contains hydrolase enzymes to break down waste material
41
List and describe the structures commonly found in a prokaryotic cell.
Nuceloid, plasmid, pilli and flagellum. A plasmid is a small circular DNA molecule found in bacteria and some other microscopic organisms. Plasmids are physically separate from chromosomal DNA. The pilli are for reproduction and the flagella propel movement of the cell
42
Compare the eukaryotic cell structure among animals, fungi and plants (6-8 marks)
Both fungi and plants have a cell wall while animals do not. The fungi cell wall is made of chitin while the cell wall of plants is made of cellulose. Animals, Plants and fungi all have a vacuole. However, the vacuole is smaller in animals is may be temporary in contrast to plants where it is permanent and serves the role of maintaining turgor pressure. Fungi also have a large vacuole. Plastids are ONLY found in plants/ Similarly, centrioles are ONLY found in animals. Some animals have cilia, while cilia does not exist in plants or fungi. Cilia is used to move the ovum in the ovary duct to the uterus. All 3 types of organisms have flagella, to some extent. For instance, the sperm cell has 1 flagellum to propel itself to the egg. Cell walls are tough layers, outside of the plasma membrane. The main component in plant cell walls is cellulose and in fungal cells it is chitin. Animal cells do not have cell walls, which allows them to take in food by endocytosis but makes them vulnerable to bursting if too much water enters by osmosis. Vacuoles are single-membrane sacs of fluid in the cytoplasm. There is often a large permanent vacuole in cells of fungi and plants, used for storage of substances and pressurising the cells, maintaining turgor pressure in plants. Two types of small temporary vacuoles occur in some animal cells but not in plant cell s or fungus cells: contractile vacuole that expels access water by exocytosis and food vacuoles tat digest food or digest pathogens taken in by endocytosis. Plastids are a family of double-membraned organelles. Plant cells have varied types of chloroplasts (for photosynthesis) and amyloplasts (amyloplasts store starch). Animals and fungus cells have no plastids. Centrioles: Centrioles are organelles composed of a 9+2 arrangement t of microtubules, They are used in animal cells to organise assembly of a spindle of microtubules during mitosis and meiosis. Cilia and flagella are whip-like structures with a 9+2 arrangement of microtubules inside and plasma membrane on the outside, They protrude from the cell and generate movement by a beating action. Sone types of animal cell have many cilia, which are small and move fluids adjacent to cell. Male gametes (sperm) in animals have a single flagellum (tail, which is much longer than cilia and causes sperm to move. Some plants, including ferns and mosses, have motile male gametes with a flagellum- but conifers, flowering plats and almost al fungi fo not. A2.2.8- Differences in eukaryotic cell structure between animals, fungi and plants Include presence and composition of cell walls, differences in size and function of vacuoles, presence of chloroplasts and other plastids, and presence of centrioles, cilia and flagella.
43
Distinguish between resolution and magnification
Resolution (resolving power) of a microscope is its ability to separate visually small objects that are very close together. If two separate objects cannot be resolved, they are seen as one object. However, magnification is simply the degree to which the size of an image is increased compared to the actual size of the specimen.
44
A photomicrograph of a tissue is accompanied by a scale bar which represents 1μm. The scale bar is 10 mm long. What is the magnification of this photomicrograph?
X 10 000 Image= actual photo size X magnification Actual size= Image divide by magnification Magnification= Image size divide by actual size A2.2.2- Microscopy Skills Application of skills: Students should have experience of making temporary mounts of cells and tissues, staining, measuring sizes using an eyepiece graticule, focusing with coarse and fine adjustments, calculating actual size and magnification, producing a scale bar and taking photographs.