Origins of Microbiota: Fetus
Sterile until birth, exposure to environment leads to colonization
Symbiosis:
Two organisms living together
Commensalism:
One organism benefits, other is unharmed
Mutualism:
Microorganism and host benefit
Parasitism:
One organism benefits while the host is harmed
Indigenous microbiota:
Microbes commonly found on or in healthy persons
Resident microbes:
Colonize area for months or years
Transient microbes:
Temporarily colonizing host
Carrier state:
Pathogenic organism establish themselves in host without symptoms
Factors That Determine the Composition of
the Usual Microbial Biota:
Normal microbiota:
Significant role in providing host resistance to
infections
Normal Microbiota: Skin
Normal Microbiota: Mouth
Upper respiratory tract:
Mouth, nasopharynx, oropharynx, larynx
Lower respiratory tract:
Trachea, bronchi, pulmonary parenchyma
-protected by ciliary epithelial cells and mucus, normally considered sterile
GI tract:
Comprises esophagus, stomach, small intestine, and colon
Stomach is low in microbes due to pH=2, what are some exceptions?
– Some Streptococcus, Enterococcus, Prevotella and H. pylori can live here
– Endospores, parasitic cysts, and microbes enmeshed in food - Escape stomach and enter the intestine
Colon has largest number of microbes in GI tract:
– 10^12 bacteria per gram of solid material
– contains over 70% of all microbes in the body.
– Most are obligate anaerobes
– Many use pili to hold
Antibiotics affect:
Can change usual biota. Can cause severe necrotizing enterocolitis, diarrhea, or superinfection.
Sterile sites in GU tract:
Kidneys, bladder, cervix, and fallopian tubes
Nonsterile sites of GU tract:
Distal centimeter of urethra, vagina
Opportunistic infections:
Cause disease when habitat is changes, may occur due to weak immune system.
Immunosuppression caused by:
– Immunosuppressive drugs
– Chemotherapy
– Radiation
– Immune defects
The normal microbiota benefits the host by ___
Priming the immune system, outcompeting potential pathogens for nutrients, and creating a hostile environment for other microbes.