Exam 2 Flashcards

(89 cards)

1
Q

Signal molecule

A

A chemical messenger secreted by one cell to influence another; examples include hormones, neurotransmitters, and growth factors.

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2
Q

Receptor

A

A protein that binds a signaling molecule (ligand) and initiates a cellular response.

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3
Q

Ligand

A

A molecule that specifically binds to a receptor to activate or inhibit signaling.

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4
Q

Signal transduction

A

The process by which an extracellular signal is converted into an intracellular response through molecular cascades.

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5
Q

Effector protein

A

The final target of a signaling pathway that directly brings about a cellular change (e.g., enzymes, transcription factors).

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6
Q

Amplification

A

A single activated receptor triggers multiple downstream molecules, strengthening the signal.

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7
Q

Integration

A

When multiple signaling pathways interact and combine to determine a single cellular response.

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8
Q

Distribution

A

A single signaling pathway can influence multiple cellular processes simultaneously.

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9
Q

Feedback regulation

A

Signaling outputs feed back to regulate earlier steps; can be positive (enhancing) or negative (inhibiting).

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10
Q

Desensitization

A

Reduced receptor responsiveness after prolonged exposure to a signal.

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11
Q

Endocrine signaling

A

Signal molecules (hormones) travel long distances through the bloodstream to reach target cells.

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12
Q

Paracrine signaling

A

Signal molecules act locally on nearby target cells.

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13
Q

Autocrine signaling

A

A cell secretes a signal that acts on itself.

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14
Q

Synaptic signaling

A

Nerve cells transmit neurotransmitters across synapses to target cells.

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15
Q

Contact-dependent signaling

A

Requires physical contact between cells; signaling molecule remains membrane-bound.

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16
Q

Steroid hormone signaling

A

Hydrophobic hormones pass through the membrane, bind intracellular receptors, and directly alter gene expression.

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17
Q

Intracellular vs cell-surface receptors

A

Intracellular receptors bind small, nonpolar ligands like steroid hormones; cell-surface receptors bind polar molecules.

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18
Q

Loss-of-function mutation

A

Removes or reduces protein activity; reveals necessity of a gene in a pathway.

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19
Q

Gain-of-function mutation

A

Creates a constitutively active protein or new function; shows sufficiency of a gene in signaling.

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20
Q

Constitutively active mutant

A

Remains active without a signal, mimicking constant pathway activation.

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21
Q

Kinase-dead mutant

A

Carries an inactivating mutation in the kinase domain, blocking phosphorylation activity.

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22
Q

Epistasis

A

One gene’s mutation masks or alters the phenotype of another; helps determine order of signaling components.

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23
Q

Double mutant analysis

A

Compares phenotypes of combined mutations to map pathway order (which gene acts upstream or downstream).

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24
Q

In vivo experiment

A

Performed in a living organism. to test and study how a disease, drug, or treatment affects a whole, living organism

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25
In vitro experiment
Performed in isolated cells or test tubes outside a living organism. mechanisms of action, test potential treatments, and assess toxicity. This approach allows for isolated examination of components like cells, tissues, or molecules,
26
Phenotype
Observable characteristic resulting from a genotype or mutation.
27
G-protein-coupled receptor (GPCR)
Seven-pass transmembrane receptor that activates trimeric G-proteins when bound by ligand.
28
G-protein
A trimeric protein (α, β, γ) that binds GTP or GDP to regulate intracellular effectors.
29
Alpha subunit (Gα)
Binds GDP/GTP; activates or inhibits target enzymes when GTP-bound.
30
Beta and gamma subunits
Function as a complex to regulate ion channels or other targets.
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Adenylyl cyclase
Enzyme activated by Gα that converts ATP to cyclic AMP (cAMP).
32
cAMP (cyclic AMP)
Second messenger that activates protein kinase A (PKA).
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Phospholipase C (PLC)
Membrane enzyme that cleaves PIP2 into IP3 and DAG.
34
IP3 (inositol trisphosphate)
Small second messenger that triggers Ca2+ release from ER.
35
DAG (diacylglycerol)
Lipid second messenger that helps activate protein kinase C (PKC).
36
Second messenger
Small molecule generated in response to receptor activation to propagate signaling.
37
Intrinsic GTPase activity
Hydrolysis of GTP to GDP by Gα subunit, turning the signal off.
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GPCR signaling shutdown
Occurs when Gα hydrolyzes GTP, reassociates with βγ, and ligand dissociates.
39
Protein kinase A (PKA)
Enzyme activated by cAMP; phosphorylates serine/threonine residues on target proteins.
40
PKA regulatory subunit
Binds and inhibits catalytic subunit; releases it when cAMP binds.
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PKA catalytic subunit
Performs phosphorylation after release from regulatory subunit.
42
Phospholipase C (PLC)
Cleaves PIP2 into IP3 and DAG to generate two second messengers.
43
IP3
Triggers Ca2+ release from ER.
44
DAG
Activates PKC together with Ca2+.
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Protein kinase C (PKC)
Ser/Thr kinase activated by DAG and Ca2+; phosphorylates cytosolic targets.
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CREB
Transcription factor phosphorylated by PKA to initiate gene transcription.
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Adrenaline – fast response
Activates glycogen breakdown via PKA-mediated enzyme phosphorylation.
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Adrenaline – slow response
PKA activates CREB → gene transcription → long-term change.
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Receptor tyrosine kinase (RTK)
Single-pass transmembrane receptor with cytoplasmic kinase domain activated by dimerization.
50
Enzyme coupled receptors (ECR)
Are transmembrane proteins that display their ligand-binding domains on the outer surface of the plasma membrane
51
Growth factors (GF)
Extracellular signaling molecule that stimulates a cell to increase in size and mass, common cellular response: cell devision, cell growth, differentiation, survival
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Docking site
a physical location on a target membrane where vesicles specifically attach for fusion
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Autophosphorylation
RTKs phosphorylate their own tyrosine residues upon dimerization, creating docking sites.
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SH2 domain
Protein domain that binds phosphorylated tyrosines on RTKs.
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SH3 domain
Domain that binds to proline (a.a)-rich sequences to link signaling proteins (one a.a)
56
Adaptor proteins
Nonenzymatic proteins that connect RTKs to downstream effectors (e.g., Grb2).
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Interaction Domains
specialized domains for recognizing and binding to specific structures w/in proteins (non enzymatic).
58
Scaffolding protein
Bring together proteins in an intracellular signaling pathway, facilitating interactions
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GTPase
family of enzymes that function as "molecular switches" by hydrolyzing guanosine triphosphate (GTP) to guanosine diphosphate (GDP)
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Ras
Small GTPase that relays RTK signals to MAP kinase pathway.
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Ras-GEF
Promotes GDP→GTP exchange on Ras (activating it).
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Ras-GAP
Stimulates GTP hydrolysis on Ras (inactivating it).
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MAP kinase (MAPK)
Mitogen-activated protein kinase that phosphorylates targets controlling growth and differentiation.
64
MAP kinase kinase (MAPKK)
Activates MAPK through phosphorylation.
65
MAP kinase kinase kinase (MAPKKK)
Activates MAPKK to initiate the cascade.
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Phosphorylation cascade
Sequential kinase activation amplifying the original signal.
67
PI3K
Phosphoinositide 3-kinase; phosphorylates PIP2 to form PIP3.
68
PIP2
Phosphatidylinositol 4,5-bisphosphate, a membrane phospholipid cleaved or phosphorylated during signaling.
69
PIP3
Phosphatidylinositol 3,4,5-trisphosphate; recruits Akt to the membrane.
70
Phosphodiesterase
Degrades cAMP → AMP, stopping GPCR signals.
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Akt
Protein kinase B; promotes cell survival and growth.
72
Receptor dimerization
two receptor molecules, often in response to a signaling molecule, come together to form a complex, leading to their activation and the initiation of cellular signals
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Bad
Pro-apoptotic protein inactivated by Akt phosphorylation.
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TOR
Target of rapamycin; kinase that stimulates protein synthesis and growth.
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Integration (cross-talk)
Multiple pathways influence shared targets to fine-tune responses.
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Upstream gene
Acts earlier in the pathway; its mutation prevents activation of downstream components
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Downstream gene
Acts later in the pathway; its activation depends on upstream signals.
78
Fluorescence
Emission of light by a molecule after excitation by an external energy source.
79
Fluorophore
Fluorescent compound that emits light upon excitation (e.g., GFP).
80
Green Fluorescent Protein (GFP)
Protein used to visualize live-cell protein localization and dynamics.
81
Tagging
Covalently attaching a fluorophore or genetically fusing GFP to a protein of interest.
82
Photobleaching
Irreversible destruction of fluorophore fluorescence by intense light exposure.
83
FRAP (Fluorescence Recovery After Photobleaching)
Technique measuring membrane or protein mobility by bleaching and tracking fluorescence recovery.
84
Diffusion coefficient
Quantifies how fast molecules move; higher = faster fluorescence recovery.
85
Single-particle tracking (SPT)
Tracks movement of individual molecules to measure diffusion behavior.
86
Fast recovery
Indicates molecules are mobile or freely diffusing.
87
Membrane fluidity
Degree to which lipids/proteins move within the bilayer; inferred from FRAP recovery rate.
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Slow recovery
Suggests molecules are immobile or tightly bound.
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