To see if a mutation is absent or present
Allele specific PCR
Determine point mutation
Oligonucleotide ligation assay
Copy number changes
MLPA
FISH
qPCR (if FISH unsuitable)
Microarray CGH (genome wide screen)
If can’t use PCR to detect a known sequence (because strand is too long or GC rich)
Southern Blotting
Detect an unknown mutation
DNA sequencing (clonal)
Blotting test used for protein
Western
Blotting test used for RNA
Northern
Blotting test used for DNA
Southern
Which patients are tested for a copy number change?
Learning disabilities
Low IQ
Dysmorphic
Autism spectrum
To detect prenatal aneuploidy
Quantitative fluorescent PCR
Tumours
FISH
Chromosomal abnormalities such as translocation
G-banding