What is the chromatin?
Many nucleosomes linked together
What forms a nucleosome?
DNA connected to histone
What is chromosome?
Many chromatins linked together
What is the role of H1 in chromatin structure?
H1 binds to the nucleosome and linker DNA, stabilizing the chromatin fiber
How does histone and DNA bind to each other?
DNA nucleotides are charged negatively (because of phosphate) and Histone is positively charges (due to Lysine and Arginine)
What is euchromatin?
Less condensed chromatin that is transcriptionally active. Appears light.
What is heterochromatin
Condensed chromatin that is transcriptionally inactive. Appears dark.
What is DNA methylation?
Adding methyl group to DNA segment, making it inactive
What is the effect of methylation within gene promoters (CpG islands)?
Represses (silences) gene transcription.
What is the effect of histone methylation?
Makes DNA mute (inactive).
Which residues of histones can be methylated?
Lysine
Arginine
What is histone acetylation?
Removal of histone’s positive charge (by acetyl group), relaxing DNA and promoting transcription.
What is the effect of histone deacetylation?
Tightens DNA coiling, leading to transcriptional deactivation.
True or False: Histone deacetylation activates DNA.
False
What is a nucleoside?
Base + (deoxy)ribose (sugar)
Nucleosides are the building blocks of nucleotides, consisting of a nitrogenous base attached to a sugar.
What components make up a nucleotide?
Base + (deoxy)ribose + phosphate (-)
What are the two types of nitrogenous bases?
Purines (A, G) and Pyrimidines (C, U, T)
Purines have two rings, while pyrimidines have one ring.
What is the structure of purines?
2 rings
Purines include adenine (A) and guanine (G).
What is the structure of pyrimidines?
1 ring
Pyrimidines include cytosine (C), uracil (U), and thymine (T).
Which nucleotide is found in RNA?
Uracil
Thymine is found in DNA.
Which nucleotide is found in DNA?
Thymine
Thymine replaces uracil in DNA.
What is the strength comparison between C-G and A-T bonds?
C-G bond (3 H bonds) is stronger than A-T bond (2 H bonds)
This affects the melting temperature of DNA.
In which direction does DNA replication occur?
5′ to 3′ direction
What is the replication fork?
Y-shaped region along DNA template where leading and lagging strands are synthesized