GI Flashcards

(70 cards)

1
Q

CHEAK FA BOOK FOR PHYSIO

A

ESPISIALLY P 378/379/380 FOR TABLES

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2
Q

VIPoma / WDHA

A

VIPoma (Pancreatic Cholera)

Type: Pancreatic islet cell tumor secreting VIP

Triad (WDHA syndrome):

Watery diarrhea (>3 L/day, secretory, persists despite fasting)

Dehydration / Hypokalemia

Achlorhydria

Pathophysiology:

VIP → ↑ cAMP in enterocytes → ↑ Na⁺, Cl⁻, H₂O secretion

Also stimulates pancreatic HCO₃⁻ and Cl⁻ secretion

Differentiation:

Not inflammatory (no blood/pus)

Not osmotic (doesn’t improve with fasting/diet change)

Treatment:

Octreotide (somatostatin analog) → ↓ VIP secretion

IV fluids/electrolytes, surgical resection if possible

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3
Q

Vitamin Supplementation

A

1)) Breast milk = gold standard (proteins, carbs, fats, vitamins, trace minerals, Ig, enzymes).

Deficient in:

Vitamin K → IM at birth (prevent hemorrhagic disease).
Vitamin D → supplement in all exclusively breastfed infants (prevent rickets).
Iron →Preterm / low-birthweight infants: need earlier iron

2)) Vegan diet
Potential nutritional deficiencies

Common: vitamin B12, vitamin D, calcium
Possible*: iron, zinc (children young women ):

3)) B12 DEFICINCY
Vitamin B12 ↓
Methylmalonic acid ↑ (specific for B12 deficiency)
Homocysteine ↑ (also elevated in folate deficiency)

Treatment Response
After starting vitamin B12 replacement:
Reticulocyte count ↑ within 3–4 days, peaks at ~1 week IMPORTANTT
Hemoglobin & RBC count normalize over 6–8 weeks

Source of IF: Parietal cells (body & fundus of stomach).
Function: IF binds vitamin B12 → complex absorbed in terminal ileum.
After Total Gastrectomy: No IF production → severely impaired B12 absorption

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4
Q

Parietal cells (stomach):

A

H⁺/K⁺ ATPase (proton pump): pumps H⁺ into lumen ↔ K⁺ into cell.

PPIs (eg, omeprazole):
Inhibit H⁺/K⁺ ATPase → ↓ gastric acid secretion.

Clinical uses:
Peptic ulcer disease
GERD
Zollinger–Ellison syndrome (gastrinoma)

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5
Q

Diarrhea

A

Daily GI fluid load: ~2 L intake + ~7 L secretions → ~9 L total.

Small intestine: reabsorbs most fluid.

Mechanism of Water Absorption

Apical (lumen side) : Na⁺ cotransport with Cl⁻, glucose, or amino acids.

Basolateral (blood side) : Na⁺/K⁺ ATPase pumps Na⁺ out → osmotic gradient pulls H₂O through tight junctions.

Acute Viral Diarrhea (eg, Rotavirus, Norovirus)

Mechanism: ↓ NaCl absorption or ↑ Cl⁻ secretion (via ↑ cAMP, cGMP, Ca²⁺).
Results: Watery diarrhea (non-bloody, no leukocytes).

Treatment:
IMPORTANT
Oral rehydration solution (ORS): hypotonic, equimolar Na⁺ + glucose → enhances Na⁺ & H₂O absorption.

Most effective therapy to maintain volume/electrolyte balance in children with acute diarrhea.

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6
Q

Diabetic diarrhea

A

Cause: Long-standing hyperglycemia → glycosylation of vasa nervorum → nerve ischemia & damage.

Autonomic Involvement: Damage to sympathetic & parasympathetic nerves → GI dysmotility.

Features:

Watery, secretory-like diarrhea (persists with fasting, including nocturnal diarrhea). IMPOTARTANTT

Fecal incontinence (large-volume diarrhea + ↓ anorectal sensation).

Failure of relaxation in fundus & uncoordinated peristalsis

Labs typically normal (no fecal leukocytes/occult blood).

Other GI Manifestations: Gastroparesis, gastroesophageal reflux.

Clinical presentation

Postprandial bloating & vomiting
Early satiety
Impaired nutrition & weight loss

Diagnosis

Nuclear gastric emptying study: delayed transit into duodenum

Treatment

Promotility drugs: metoclopramide, erythromycin

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7
Q

Swallowing

A

Protective airway movements:

1)) Larynx moves up & forward (under tongue → directs food into esophagus).

2))Epiglottis tilts → blocks airway.

3))Glottis closes (vocal fold adduction).

Stroke patients:

High risk of dysphagia & aspiration (complex coordination impaired).
Management (if neurologic deficit persists):
Behavioral modifications may help.

Chin-tuck maneuver: important

Flex head/neck during swallow.

larynx elevation (superior displacement).
Narrows laryngeal entrance. → Reduces aspiration risk.

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8
Q

Protein digestion:

A

Starts: Stomach → Pepsin (activated by HCl).

Major site: Small intestine.

Pancreatic enzymes (secreted inactive):

Trypsin, chymotrypsin, carboxypeptidase, elastase.

Activation cascade: IMPORTANTT

Enteropeptidase (brush border enzyme): trypsinogen → trypsin.

Trypsin → digests proteins & activates other pancreatic proteases + lipase/colipase.

Enteropeptidase deficiency: IMPORTANTT

↓ Trypsin activation → impaired protein and fat digestion.

Clinical signs:

Diarrhea

Failure to thrive

Edema (hypoproteinemia)

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9
Q

Phases of Gastric Acid Secretion

A

Phases of Gastric Acid Secretion

Cephalic phase

Trigger: Thought, sight, smell, taste of food

Mediator: Vagus nerve (ACh, vagal stimulation)

Effect: ↑ acid secretion

Gastric phase

Trigger: Food in stomach (distension, peptides, amino acids)

Mediator: Gastrin → ↑ histamine (from ECL cells) → ↑ acid

Effect: Major stimulator of acid secretion

3)) Intestinal phase

Trigger: Chyme (esp. protein) in duodenum

Effect: Minor stimulation of acid initially

Main role: Down-regulation of gastric acid secretion after meal

Peptide YY (ileum & colon): inhibits gastrin-induced histamine release from ECL cells

Other inhibitors: Somatostatin, prostaglandins

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10
Q

CHEACK THE PATHOLOGY SECTION FROM THE BOOK

A

in the flash cards I will highlight only recurrent questions or hidden detail

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11
Q

Hepatitis

A

in acute :
Viral antigens trigger cytotoxic T lymphocyte response via MCH1.

T cells CD8+ induce hepatocyte apoptosis (virus does not have a cytotoxic effect itself) VERY IMPORTANT

Panlobular lymphocytic inflammation.
Apoptotic hepatocytes = Councilman bodies (acidophil bodies).

in Contrast:
Drug/toxin injury (eg, acetaminophen) → centrilobular necrosis (zone 3), not panlobular apoptosis.

1)) Acute Hepatitis A
IgM anti-HAV → acute infection
IgG anti-HAV → past infection or vaccination

Histology:

Spotty necrosis
Ballooning degeneration (hepatocyte swelling, wispy cytoplasm)
Councilman bodies (eosinophilic apoptotic hepatocytes)
Mononuclear infiltrates (lymphocytes)

Clinical course:

1.Prodrome (1–2 weeks): fever, malaise, anorexia, nausea, vomiting, RUQ pain.
2.Cholestatic phase: jaundice, pruritus, dark urine (↑ conjugated bilirubin), acholic stool.
3.Resolution: illness is self-limited.

Key Point:

No chronic hepatitis, cirrhosis, or hepatocellular carcinoma risk (unlike HBV/HCV).
Transmission: fecal-oral, often associated with travel to endemic areas or contaminated food/water.

2)) HBV

HBsAg
First marker to appear Infection is present (acute or chronic)
Anti-HBs
After clearance or vaccination
HBcAg
(not seen in blood) Detected only in liver tissue
Anti-HBc IgM
Acute infection (window period marker)
Anti-HBc IgG
persists lifelong Indicates prior exposure (chronic or resolved infection)
HBeAg
During active viral replication High infectivity
Anti-HBe
Lower infectivity, improving state

acute hepatitis B infection?
Virus: DNA virus, incubation 30–180 days.
Transmission: Sexual, parenteral, vertical.
Clinical features:
Serum sickness-like prodrome: fever, rash (pruritic urticarial vasculitis), arthralgias, lymphadenopathy.
Right upper quadrant pain, hepatomegaly.
↑ AST & ALT (>10× normal), ± jaundice.
Prolonged PT = poor prognosis.

Chronic infection hallmark: Ground-glass hepatocytes

Finely granular, homogeneous, pale eosinophilic cytoplasm (due to HBsAg accumulation)

3)) HCV
Anti-HCV antibody → exposure (past or current)
HCV RNA (PCR) → active infection (needed to confirm)

Histology

Acute HCV:
Panlobular lymphocytic inflammation
Ballooning degeneration (hepatocyte swelling/injury)
Councilman bodies (apoptotic hepatocytes)

Chronic HCV:
Portal lymphocytic infiltration
Lymphoid follicle formation
Fibrosis (progressive)

Cirrhosis (end-stage):
Extensive fibrosis

Acute hepatitis C is typically asymptomatic; dermatologic manifestations (eg, cryoglobulinemia) are seen in chronic infection.

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12
Q

Alcoholic hepatitis

A

Pathophysiology

Heavy ethanol consumption → intrahepatic oxidative damage → recruitment of neutrophils to the liver

Symptoms

Fever
Right upper quadrant pain
Jaundice

Histology
IMPORTANTT
Marked intrahepatic neutrophilic infiltration
Hepatocellular ballooning
Mallory-Denk bodies
Steatosis

Laboratory studies

Aminotransferase elevations with AST/ALT ratio >2:1
Direct hyperbilirubinemia
Leukocytosis
PT & PTT elevations

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13
Q

Alcohol‑related hepatic steatosis

A

Definition: Reversible accumulation of triglycerides within hepatocyte cytoplasm following recent or chronic ethanol exposure.

Rapid recall: “Ethanol → ↑ NADH/NAD+ → ↓ FFA oxidation + ↑ lipogenesis + ↑ glycerol‑3‑P → hepatocyte TG accumulation.”

Pathology clue: Macrovesicular steatosis on biopsy; potentially reversible with alcohol cessation.

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14
Q

Chronic Cholestatic Diseases

A

Primary biliary cholangitis (PBC) / Primary sclerosing cholangitis (PSC):

Present with prolonged pruritus + fatigue.

Progress to acholic stools, fat-soluble vitamin deficiency (esp. Vit D), → metabolic bone disease (osteoporosis/osteomalacia).

Chronic progressive → risk of cirrhosis, cholangiocarcinoma.

can cause malabsorption and nutritional deficiencies of fat-soluble vitamins.

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15
Q

Whipple Disease

A

Bacteria ingested → engulfed by macrophages.
Accumulation of foamy macrophages → lymphatic obstruction → malabsorption.

Clinical Triad
GI: Diarrhea, steatorrhea, weight loss, abdominal pain.
Arthralgia (migratory).
Systemic spread: CNS (dementia, ophthalmoplegia), heart (endocarditis).

PAS-positive macrophages in lamina propria IMPORTANTT

TX: Long-term (ie, ≥12 months) antibiotic therapy is usually successful in resolving the symptoms, although relapses can occur.

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16
Q

Peptic Ulcers

A

1)) Duodenal ulcers MOST COMMON SITE

95% in 1st part of duodenum. (note: its intraperitoneal and the rest of duodenal is retro )

Rarely malignant → no biopsy needed.

H. pylori–related but no increased risk of duodenal carcinoma.

VERY IMPORTANT::

Posterior duodenal ulcers erode the GASTODUODENAL A. (massive GI bleeding).

Anterior duodenal ulcers are more likely to perforate into the peritoneum (peritonitis).

2)) Gastric ulcers

May be malignant → must biopsy.

H. pylori–associated ↑ risk of gastric adenocarcinoma.

MC Location: Lesser curvature of the stomach at the transitional zone between the corpus (body) and antrum.

Cell types:

Corpus: Parietal cells → hydrochloric acid + intrinsic factor.
Antrum: G cells → gastrin.

Pathogenesis: Optimal environment for H. pylori → chronic inflammation → mucosal atrophy → ulcer formation.

Hemorrhage risk: Left and right gastric arteries run along the lesser curvature → common source of bleeding from penetrating ulcers. IMPORTANTTTT

Other complications: Penetration into adjacent organs (biliary tract, colon), gastric outlet obstruction, free wall perforation with peritonitis.

3)) Refractory or distal duodenal ulcers → think gastrinoma (Zollinger-Ellison syndrome).

Antral gastritis → duodenal ulcers

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17
Q

Gallstones (Cholelithiasis)

A

gallstone formation
↑ Cholesterol in bile risk of cholesterol gallstones.
↓ Bile salts & ↓ phosphatidylcholin
↑ risk of cholesterol gallstones.

Types

1))Cholesterol stones (most common in U.S.)

Yellow, radiolucent (unless mixed with Ca²⁺).

Risk factors: Obesity, metabolic syndrome, multiparity, oral contraceptives, rapid weight loss, Native American ethnicity.

Crohn Disease (Terminal Ileum):
Inflammation → bile acid loss in feces.
↓ Bile acids in bile → ↑ cholesterol/bile acid ratio → supersaturation.
Result: Cholesterol gallstone formation

2)) Pigment stones (10–25% U.S.; more common in Asia).

Brown stones:

Cause: Biliary tract infections (bacteria/helminths produce β-glucuronidase).

Soft, greasy.

Black stones:

Cause: Chronic hemolysis (eg, sickle cell, thalassemia, hereditary spherocytosis), ileal disease (↑ enterohepatic cycling).

Small, numerous, spiculated, friable.

High Ca²⁺ content → radiopaque (seen on x-ray).

Beta-glucuronidase released by injured hepatocytes and bacteria hydrolyzes bilirubin glucuronides to unconjugated bilirubin

✅ High-yield pearls:

Brown stones = infection.

Black stones = hemolysis / ↑ bilirubin cycling.

Cholesterol stones = obesity, estrogen, weight changes

can cause malabsorption and nutritional deficiencies of fat-soluble vitamins.

Pathophysiology:

Gallbladder hypomotility → impaired emptying → bile becomes concentrated
Active water absorption by gallbladder → bile dehydration → precipitation of:

Cholesterol monohydrate crystals
Calcium bilirubinate
Mucus

Formation of viscous biliary sludge IMPORTANTT

Clinical Features:
Often asymptomatic
Can cause biliary colic (RUQ pain + nausea)
May progress to cholesterol stones

Nonvisualization of the gallbladder on HIDA scan despite visualization of the biliary tree and small bowel = cystic duct obstruction (acute cholecystitis).

EVEN THOUGH The presence of echogenic structures within the gallbladder on ultrasound can be suggestive of acute cholecystitis in the setting of fever and abdominal pain, but it is not diagnostic. Cholelithiasis can also cause more benign biliary colic, or be an incidental asymptomatic finding in the setting of other abdominal pathology. Ultrasound findings more specific for acute cholecystitis include gallbladder wall thickening, pericholecystic fluid, and a positive sonographic Murphy sign.

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18
Q

Pancreatic Neuroendocrine Tumors (PanNETs)

A

Origin: Pancreatic islet cells.

Immunohistochemistry : IMPORTANTTTT

Synaptophysin → neuroendocrine synaptic vesicles.
Chromogranin A → secretory granules.
Positive staining confirms neuroendocrine origin

Types:

1)) Functional → secrete hormones, cause clinical syndromes:
Insulinoma
Gastrinoma (Zollinger-Ellison)
Glucagonoma (necrolytic migratory erythema, diabetes, weight loss)
VIPoma (→ WDHA)

2)) Nonfunctional → no hormone excess; present due to mass effect (epigastric pain, weight loss, jaundice, palpable mass).

Histology

Well-circumscribed tumor.
Organoid architecture: nested, glandular, ribbon, pseudorosette.
Uniform round nuclei with salt-and-pepper chromatin.
Granular cytoplasm.

.

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19
Q

Liver TUMORS

A

1)) LIVER Metastases

Most common liver neoplasm = metastatic tumors, not primary hepatocellular carcinoma.

Why the liver is prone to metastasis
1.Fenestrated hepatic sinusoidal endothelium → easy entry of tumor cells into parenchyma.
2.Dual blood supply (portal + systemic) → ↑ chance of circulating tumor deposition.

Common Primary Sources

Colorectal cancer (most common, via portal venous spread).
Gastric cancer.
Pancreatic cancer.
Other: breast, lung.

contrast-enhanced CT scan shows multiple hypodense masses in the liver consistent with metastatic liver disease

2)) HCC

Aflatoxin B1 → p53 mutation → HCC

Produced by Aspergillus BY
Contaminates food: corn, peanuts, grains
Grows in hot, humid climates

Alpha-fetoprotein is a serum tumor marker that is often moderately elevated in patients with chronic viral hepatitis. However, it can be strikingly elevated in those with HCC

3)) hepatic angiosarcoma
vinyl chloride ,arsenic

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20
Q

IBD

A

UC :

Toxic megacolon is a well-recognized complication of ulcerative colitis.
Patients typically present with abdominal pain/distension, bloody diarrhea, fever, and signs of shock.
Plain abdominal x-ray is the preferred diagnostic imaging study.
Barium contrast studies and colonoscopy are contraindicated due to the risk of perforation.

Th2 cells are involved in the pathogenesis of ulcerative colitis. They produce IL-5 and IL-13, which contribute to inflammation and damage of the intestinal mucosa.

CRONS:
Th1 and macrophage activation in response to a difficult-to-eradicate antigen.
Granulomas are characterized by a large number of epithelioid macrophages that may fuse together to form multinucleated cells (Langhans giant cells) surrounded by a band of lymphocytes

strictures (due to bowel wall edema, fibrosis, and thickening of the muscularis mucosae IMPORTANT), fistulas (due to penetration of ulcers through the intestinal wall), and abscesses.

Crohn disease is associated with oxalate kidney stones.
Impaired bile acid absorption in the terminal ileum leads to loss of bile acids in feces with subsequent fat malabsorption. Intestinal lipids then bind calcium ions, and the resulting soap complex is excreted. Free oxalate (normally bound by calcium to form an unabsorbable complex) is absorbed and forms urinary calculi (enteric oxaluria).

IL-10 inhibits proinflammatory cytokines from monocytes/macrophages and dendritic cells (eg, IL-1β, IL-6, IL-12, TNF-α) and suppresses chemokines that recruit effector cells, shutting down inflammatory cascades. It downregulates antigen presentation by reducing MHC class II and co-stimulatory molecules on antigen-presenting cells, and directly limits T-cell IL-2 and IFN-γ production and proliferation

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21
Q

LFT

A

↑ ALP + ↑ GGT → hepatobiliary origin
↑ ALP + normal GGT → bone origin

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22
Q

CRC

A

Most important prognostic factor: Tumor stage (invasion/spread) NOT GRADE

Early stage (best prognosis): confined to mucosa (lamina propria, basement membrane)

Progression:

Invades submucosa → muscularis propria

Regional lymph nodes involvement

Distant metastasis (eg, liver, lung) → worst prognosis

CEA :
CEA is NOT a screening or diagnostic tool for colon cancer.

CEA is most useful for follow-up:
Detecting residual disease after surgery
Early identification of recurrence

Adenomatous and sessile serrated polyps are neoplastic polyps that have malignant potential. Increasing polyp size is the most important risk factor for cancer; villous histology and high-grade dysplasia are additional risk factors.

Hundreds–thousands of polyps
Autosomal dominant inheritance
Nearly 100% colorectal cancer risk IMPORTANT

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23
Q

Esophageal SCC vs Adenocarcinoma

A

🔹 Squamous Cell Carcinoma (SCC):

Histology:

Flattened polyhedral/ovoid epithelial cells
Eosinophilic cytoplasm
Keratin pearls / nests
Intercellular bridges

Location: Upper & middle esophagus

Risk factors: Alcohol, smoking, achalasia, caustic injury, Plummer-Vinson

🔹 Adenocarcinoma (ADC):

Histology:

Glandular cells forming mucin-producing glands
Infiltrating columnar epithelium with intestinal-type differentiation

Location: Distal esophagus (near GE junction)

Risk factors: Barrett esophagus (from GERD), obesity, smoking

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24
Q

Food Protein–Induced Allergic Proctocolitis (FPIAP)

A

Pathophysiology

Non–IgE-mediated hypersensitivity
Eosinophilic inflammation of rectosigmoid colon

Triggers: cow’s milk, soy protein (in formula or breast milk)

Clinical Features

Age: 1–4 weeks (up to 6 months)
Well-appearing infant (no systemic illness)
Painless, blood- and/or mucus-streaked stools (Hemoccult +)

Treatment & Prognosis
Remove trigger protein:
Hydrolyzed formula (if formula-fed)

Maternal elimination of dairy/soy (if breastfed)

Symptoms resolve in 1–2 weeks
Tolerance by age 1 in most infants

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25
Dermatomyositis VS Scleroderma
Dermatomyositis Painless proximal muscle weakness (difficulty climbing stairs, lifting arms) Heliotrope rash (violaceous eyelid rash) ± Gottron papules (on knuckles) Affected muscle: striated → limbs, oropharynx & upper esophagus Scleroderma Pathology: Atrophy & fibrous replacement of distal esophageal smooth muscle
26
Acute Pancreatitis
Fat Necrosis (early finding) Lipase release → adipocyte destruction Fatty acids + Ca²⁺ → calcium soaps (saponification) Gross: chalky white deposits Micro: necrotic (anucleate) adipocytes + basophilic calcium deposits
27
Acute Pancreatitis
Most Common Causes: 1)Gallstones – especially middle-aged/older women 2)Alcohol use – Macrocytosis (MCV >100 fL) even without anemia IMPORTANT 3)OTHRES (I GOT SMASHED) IMPORTANT: hypertriglyceridemia TG>1000 mg/dL → FFA-mediated acinar injury → acute pancreatitis Idiopathic ERCP procedure Hypercalcemia Scorpion Drugs: azathioprine, sulfasalazine, furosemide, valproic acid Infections: mumps, Coxsackie virus, Mycoplasma pneumoniae ETC... ##NOTE: Most pancreatic enzymes are zymogens (inactive). Trypsinogen → Trypsin via duodenal enterokinase; trypsin then activates other enzymes. Protective mechanisms: (prevent autodigestion from prematurely activated enzymes) IMPORTANTTT 1)SPINK1: inhibits prematurely activated trypsin. 2)Trypsin autoinhibition: trypsin can inactivate itself. #Hereditary pancreatitis: mutations in trypsinogen (PRSS1) or SPINK1 → trypsin not inactivated → recurrent acute pancreatitis
28
chronic pancreatitis?
Pathogenesis: Chronic inflammation → pancreatic fibrosis & atrophy → loss of exocrine (lipase, elastase, amylase, trypsin, chymotrypsin) & endocrine (insulin) function. Clinical features: Postprandial steatorrhea (bulky, foul-smelling, difficult-to-flush stools). Epigastric pain with meals. Progressive weight loss, fat-soluble vitamin deficiency. ALSO may cause vitamin B12 deficiency due to decreased production of pancreatic proteolytic enzymes (eg, exocrine insufficiency), which are needed to release vitamin B12 from R protein. Diagnostic clues: IMPORTANTTT Low fecal elastase.(also in CF ) IMPORTANTT Positive Sudan stain (fat in stool). Elevated HbA1c (loss of insulin). Sudan stain = confirms fat malabsorption the most sensitive strategy for screening for malabsorptive disorders. ##Oncogenesis in pancreatic ductal adenocarcinoma is almost always due to an early activating mutation in the KRAS oncogene,
29
Carcinoid Tumor
Origin: Enterochromaffin (endocrine) cells of intestinal mucosa → secrete serotonin, bradykinin, prostaglandins. And hormones (gastrin) Neuroendocrine cells of the GI tract Most common site in appendix: distal tip Gross/Clinical: Usually incidentally found after appendectomy Rare carcinoid syndrome (liver metastasis): flushing, diarrhea, bronchospasm Why syndrome develops: -Intestinal carcinoid without metastasis: liver metabolizes substances → no symptoms. -With liver metastasis: bypass hepatic metabolism → carcinoid syndrome. Symptoms: Flushing, diarrhea, bronchospasm, right-sided valvular lesions Histology: Round nuclei Salt-and-pepper chromatin IMPORTANT Eosinophilic cytoplasm Key test: ↑ 24-hour urinary 5-HIAA (serotonin metabolite). IMPORTANTTTTTTTTT
30
Systemic Mastocytosis
Pathogenesis: Clonal mast cell proliferation (bone marrow, skin, other organs); often due to KIT receptor tyrosine kinase mutation. Marker: ↑ Mast cell tryptase expression. Histamine Effects: Vascular: Syncope, flushing, hypotension, pruritus, urticaria. GI: ↑ gastric acid secretion → peptic ulceration; inactivation of pancreatic & intestinal enzymes → diarrhea, nausea, vomiting, abdominal cramps.
31
gastrinoma Zollinger-Ellison Syndrome (ZES)
Neoplasm Common sites: duodenum > pancreas Abdominal pain, reflux Diarrhea, steatorrhea (due to inactivated pancreatic enzymes) IMORTANTT Ulcers beyond duodenal bulb (distal duodenum, jejunum) IMPORTANT Multiple ulcers often refractory to therapy Diagnosis: Fasting gastrin (markedly elevated) Secretin stimulation test (gastrin rises paradoxically) Gastrin not only stimulates HCl secretion, but it also has a trophic effect on parietal cells. In patients with Zollinger-Ellison syndrome , gastrin hypersecretion induces parietal cell hyperplasia, causing visible enlargement of gastric folds on endoscopy VS Menetrier disease : Overproduction of TGF-α, resulting in mucosal-cell hyperplasia with gastric fold enlargement. However, the condition causes hypoplasia of parietal/chief cells, resulting in glandular atrophy with reduced gastric acid secretion.
32
Alpha-1 Antitrypsin Deficiency (AATD)
Pulmonary Manifestations Panacinar emphysema, usually basal-predominant Onset <50 years Chest X-ray: hyperlucency, flattened diaphragm, hyperinflated lungs Hepatic Manifestations Accumulation of misfolded AAT in hepatocytes Lab findings: ↑ transaminases, hyperbilirubinemia Clinical: hepatomegaly, cirrhosis, possible hepatocellular carcinoma
33
Abetalipoproteinemia
Autosomal recessive → loss-of-function in MTP (microsomal triglyceride transfer protein) Impaired formation of apoB-containing lipoproteins → no chylomicrons or VLDL Lipids accumulate in enterocytes → foamy/clear cytoplasm, especially at villus tips IMPORTANT Lipid & Vitamin Effects Severe hypolipidemia: very low plasma triglycerides & cholesterol Fat-soluble vitamin deficiency (A, D, E, K), especially vitamin E Clinical Features Presents in infancy: abdominal distention, steatorrhea, failure to thrive Neurologic: ataxia, peripheral neuropathy Ocular: retinitis pigmentosa → vision problems Hematologic: acanthocytes (spiky RBCs)
34
Congestive Hepatopathy
Cause: Impeded hepatic venous outflow due to elevated right atrial & vena caval pressures. Pathophysiology: ↑ Hydrostatic pressure in central veins → fluid seepage into hepatocytes. Centrilobular (zone 3) necrosis due to congestion and hypoxia. Patchy hemorrhage around central veins; periportal (zone 1) hepatocytes relatively preserved. Gross liver may show "nutmeg liver" appearance. Clinical features: Right-sided heart failure signs plus right upper quadrant pain (from hepatic capsule stretching). Labs: mild ↑ bilirubin, ↑ transaminases.
35
gastric adenocarcinoma
Risk factors High-salt diet IMPORTANTT N-nitroso–containing compounds (eg, processed meat, tobacco) Chronic Helicobacter pylori infection Autoimmune chronic atrophic gastritis Obesity Clinical features Early satiety, weight loss Epigastric pain, melena Left supraclavicular &/or umbilical lymphadenopathy Gross appearance/histopathology Intestinal type: Ulcerated mass with irregular rolled or heaped-up edges Glandular structures with intestinal-like columnar or cuboidal cells (similar to colon adenocarcinoma) Diffuse: Plaque-like infiltration of stomach (eg, linitis plastica) Signet-ring cells without glandular structures
36
Acute ischemic colitis (nonocclusive)
What it is: Transient, low‑flow ischemia of the colon causing abdominal pain and bloody diarrhea, often after hypotension, surgery, or shock; occlusive thromboembolism is less common. Vascular anatomy: Colon supplied by SMA and IMA via the marginal artery of Drummond; distal colon also receives internal iliac branches. Watershed zones at risk: Splenic flexure (SMA–IMA border) and rectosigmoid junction (sigmoid artery–superior rectal artery border). IMPORTANT Pathology/endoscopy: Ischemia → mucosal necrosis; colonoscopy shows pale, edematous mucosa with petechial hemorrhages and possible longitudinal “single‑stripe” lesions. Triggers: Low‑flow states (hypotension, heart failure, postoperative state, dehydration) ± baseline atherosclerosis; less commonly emboli/atheroembolism (eg, AF, aortic instrumentation). Complications: Acidosis, sepsis, gangrene, perforation; right‑sided disease has higher severity and surgical risk. Pearls: Right colon, cecum, and proximal transverse colon (SMA) are less often involved than left‑sided watershed zones; rectum is usually spared due to robust collateral supply
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intussusception
Ischemic colitis after viral‑triggered ileocecal intussusception Mechanism: Viral infection → Peyer patch hypertrophy in terminal ileum → lead point trapped by peristalsis at ileocecal junction → telescoping bowel → venous congestion → ischemia/necrosis if not reduced. IMPORTANT Presentation: Intermittent, severe colicky abdominal pain with episodes of inconsolability; vomiting; later “currant jelly” stools (blood + mucus) and peritonitis signs if ischemia advances. Diagnosis/therapy: Ultrasound target sign; therapeutic air enema typically reduces; surgical intervention if peritonitis, perforation, or failed reduction. Complications if untreated: Bowel ischemia → necrosis → perforation, sepsis; may require resection.
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Necrotizing Enterocolitis (NEC)
Preterm infant (after initiation of enteral feeds) Abdominal distension + bloody stools X-ray: curvilinear lucencies parallel to bowel lumen (air in bowel wall) (pneumatosis intestinalis) Complications: Perforation, peritonitis, sepsis, death (≈30% mortality) Long-term sequelae: Intestinal strictures & obstruction from fibrosis
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Diverticulosis
Colonic Diverticulosis with Diverticular Bleeding Pathophysiology: Diverticula formation: Weak points in colon wall where vasa recta penetrate the muscularis Bleeding mechanism: Chronic injury → thinning of vessel media → rupture into lumen → painless hematochezia Usually self-limited; can rarely cause severe hemorrhage
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cirrhosis
1️⃣ Mechanism involves hormonal imbalance (hyperestrogenism) Findings: gynecomastia, spider angiomata, testicular atrophy,Palmar erythema 2️⃣Portal Hypertension Clinical Features: Ascites Splenomegaly → thrombocytopenia Esophageal/gastric varices → risk of bleeding Caput medusae (dilated paraumbilical veins) 3️⃣ Decreased Hepatic Synthetic Function Clinical Features: Coagulopathy (↑ PT/INR) → easy bruising, bleeding Hypoalbuminemia → edema, ascites 4️⃣ Impaired Bilirubin Metabolism Clinical Features: Jaundice Dark urine, pale stools 5️⃣ Hepatic Encephalopathy Mechanism: ↓ Ammonia detoxification → neurotoxic metabolites accumulate Portosystemic shunts bypass liver → systemic circulation of toxins Clinical Features: Asterixis (flapping tremor) Confusion, altered mental status Sleep disturbances 6️⃣ Other Features Hypoglycemia: due to impaired gluconeogenesis
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Carbon Tetrachloride (CCl₄) Hepatotoxicity
Mechanism of Injury: CCl₄ metabolized by liver P450 system → CCl₃ free radical CCl₃ reacts with membrane lipids → lipid peroxidation Lipid peroxidation → membrane damage, formation of hydrogen peroxide (H₂O₂) Cycle repeats → propagation of free radical injury Cellular Effects: Swelling of endoplasmic reticulum Mitochondrial destruction Increased cell membrane permeability Hepatocyte necrosis Centrolobular necrosis is classic pattern in histology
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HISTO ZONES
Key Concept: Zone 1 (periportal): more oxygenated, first exposed to toxins carried by portal blood → toxic hepatitis may affect zone 1 (some toxins like phosphorus). Zone 3 (centrilobular): least oxygenated, richest in P450 enzymes → most vulnerable to ischemia and toxin-mediated injury. High-Yield Buzzwords: Acetaminophen toxicity → centrilobular necrosis CCl₄ → free radical injury → centrilobular necrosis Shock liver / ischemic hepatitis → centrilobular necrosis
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Mallory-Weiss Syndrome
High-Yield Points: Longitudinal mucosal tear at GE junction Acute increase in intraabdominal/gastric pressure: Forceful vomiting or retching (most common) Coughing, hiccupping, straining, abdominal trauma Forceful retching + alcohol → classic presentation Hiatal hernia → predisposing factor
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Reye Syndrome
High-Yield Points: Microvesicular steatosis without inflammation AND Mitochondrial dysfunction Hyperammonemia → encephalopathy Vomiting, confusion → rapidly progresses to coma Aspirin + viral illness in child → classic trigger Avoid aspirin in children except for: Kawasaki disease Juvenile idiopathic arthritis
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Short Bowel Syndrome & Dumping Syndrome
Short Bowel Syndrome (SBS): Cause: Massive small bowel resection or severe Crohn disease Pathophysiology: ↓ absorptive surface area + ↓ transit time → malabsorption Clinical Features: Postprandial voluminous diarrhea Weight loss Macro- and micronutrient deficiencies Key Nutrient Losses: Distal ileum loss: ↓ Bile acid reabsorption → fat malabsorption Vitamin B12 deficiency Dumping Syndrome: Cause: Gastric bypass surgery or pyloric sphincter damage Mechanism: Hyperosmolar chyme rapidly empties into small intestine → fluid shift from plasma to lumen Symptoms: GI: Nausea, vomiting, cramps, diarrhea (postprandial) Vasomotor: Diaphoresis, flushing, palpitations, hypotension
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Gastric Adenocarcinoma – Diffuse Type vs Intestinal Type
1)))Diffuse-Type Adenocarcinoma Cells: Signet ring cells (abundant mucin pushes nucleus to periphery) Growth pattern: Poorly cohesive; no gland formation Gross appearance: Diffuse infiltration of stomach wall Loss of E-cadherin (cell adhesion protein) Linitis plastica / Leather-bottle stomach (thickened, rigid wall) Buzzwords: Signet ring cells, loss of E-cadherin, linitis plastica 2))Intestinal-Type Adenocarcinoma Cells: Columnar/cuboidal forming well-formed glands (resemble colon cancer) Gross appearance: Nodular, polypoid, well-demarcated mass Often ulcerates/bleeds Associations: Chronic gastritis, intestinal metaplasia, H. pylori infection
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Encephalopathy
Trigger: Recent GI bleed increases nitrogen load (hemoglobin → ammonia). Normal Pathway: Gut (enterocytes + colonic bacteria) → ammonia → liver → detoxified to urea.(BUN which goes to kidneys) In Cirrhosis: Hepatocyte dysfunction + portosystemic shunting → ↓ ammonia detoxification. Result: ↑ circulating ammonia + neurotoxins → altered BBB transport & neurotransmitter metabolism. Neurotransmitter Effects: ↑ inhibitory (GABA) + ↓ excitatory (glutamate, catecholamines). IMPORTANT: Ammonia crosses the blood-brain barrier and causes excess glutamine to accumulate within astrocytes. This decreases the amount of glutamine available for conversion to glutamate in the neurons, resulting in disruption of excitatory neurotransmission. Clinical Effect: Reversible decline in neurologic function (hepatic encephalopathy). other precipitating factors Drugs (eg, sedatives, narcotics) Hypovolemia (eg, diarrhea) Electrolyte changes (eg, hypokalemia) ↑ Nitrogen load (eg, GI bleeding) Infection (eg, pneumonia, UTI, SBP) Portosystemic shunting (eg, TIPS)
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D-Xylose Test
Polysaccharides: Must be broken down by salivary, pancreatic, and brush border amylases → monosaccharides. Monosaccharides (glucose, galactose): Directly absorbed by sodium-dependent cotransport or facilitated diffusion. D-Xylose: Absorbed without pancreatic enzymes. IMPORTANTT TO DEFRNTIATE between pancreatic versus mucosal causes of malabsorption Used to test brush border absorptive function independent of pancreatic function. Absorption ↓ with small intestine bacterial overgrowth.
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Lactase deficiency
1)) Primary Lactase Deficiency (Lactase Nonpersistence): Most common cause; genetic. Declining lactase expression in adulthood, prevalent in Asian & African populations. Small bowel mucosa: Normal histology. 2)) Secondary Lactase Deficiency (Acquired): Caused by inflammation/infection (bacterial overgrowth, infectious enteritis, Crohn disease). Injury to brush border of small intestine → ↓ lactase. Symptoms: Flatulence, crampy abdominal pain, watery diarrhea after dairy intake. Tests: ↑ breath hydrogen, ↓ stool pH, ↑ stool osmolality.
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Small intestinal bacterial overgrowth (SIBO)
(eg, Escherichia coli, Bacteroides, Aeromonas) Risk factors Anatomic abnormalities (eg, strictures, surgery) Motility disorders (eg, diabetes mellitus, scleroderma, opioid use) Immunodeficiency (IgA deficiency) Gastric hypochlorhydria (proton pump inhibitor use) Pathogenesis Proliferation of colonic bacteria in the small intestine Maldigestion and possible malabsorption of nutrients Fermentation of carbohydrates SIBO causes deconjugation of bile acids, leading to early bile acid resorption in the jejunum, reduced lipid emulsification, and fat malabsorption Clinical manifestations Bloating, flatulence Chronic watery diarrhea Severe: steatorrhea, vitamin deficiencies Treatment Dietary changes (eg, high fat, low carbohydrate) Oral antibiotics (eg, rifaximin, ciprofloxacin)
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Dubin-Johnson syndrome
is a benign disorder characterized by defective hepatic excretion of bilirubin glucuronides across the canalicular membrane, resulting in direct hyperbilirubinemia and jaundice. Grossly, the liver appears black due to impaired excretion of epinephrine metabolites, which histologically appear as dense pigments within lysosomes. Bilirubin glucuronides = conjugated bilirubin molecules
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CHEAK THE BOOK FOR ANATOMY AND EBRYO AND HISTOO
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Meckel Diverticulum
RULE OF 2 Origin: Incomplete obliteration of the vitelline (omphalomesenteric) duct. True diverticulum: Contains mucosa, submucosa, and muscularis propria. Ectopic tissue: Most commonly gastric mucosa (acid secretion → ulceration and bleeding); can also have pancreatic or colonic mucosa. 99mTc-pertechnetate localizes to heterotopic gastric mucosa that is often contained within a Meckel diverticulum, and uptake in the periumbilical area or right lower quadrant is diagnostic. Presentation: Painless lower GI bleeding (hematochezia) Anemia (fatigue, pallor) Obstruction (abdominal pain, bilious emesis) Inflammation mimicking appendicitis
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Hirschsprung disease
Pathophysiology Failure of neural crest cell migration caudally to distal colon Absent parasympathetic ganglia in affected submucosal & myenteric plexus IMPORTANTT Chronically contracted colonic segment Clinical features Delayed passage of meconium in neonates Chronic constipation Abdominal distension Evaluation Contrast enema: narrow rectosigmoid area with dilated proximal colon Rectal suction biopsy (diagnostic): absent submucosal ganglia
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Spleen
Embryology Mesodermal origin (from mesenchyme of dorsal mesogastrium). LIKE MUSCLES ,BONE AND KIDNEYS NOT FROM ENDODERM LIKE THE REST OF GI Unique: Although mesodermal, it’s supplied by a foregut artery (splenic artery from celiac trunk). As the stomach rotates, the spleen moves to the left upper quadrant, forming the splenorenal and gastrosplenic ligaments. Trauma Most frequently injured organ in blunt abdominal trauma due to its size and position. Splenic laceration can cause massive intraperitoneal hemorrhage. Left shoulder pain after splenic rupture → Kehr sign (phrenic nerve irritation). Any abdominal process (eg, ruptured spleen, peritonitis, hemoperitoneum) irritating the phrenic nerve sensory fibers around the diaphragm can cause referred pain to the C3-C5 shoulder region (Kehr sign).
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congenital diaphragmatic hernia (CDH).
Key defect: Failure of pleuroperitoneal folds to close → posterolateral defect (Bochdalek hernia). Congenital diaphragmatic hernia: hallmark = scaphoid abdomen + respiratory distress at birth. 🔹 Pathophysiology of CDH Left-sided in ~85–90% of cases (liver on right provides some protection). Herniation of bowel/stomach/spleen into thorax during fetal development. Lung compression → pulmonary hypoplasia (primary cause of morbidity/mortality). Mediastinal shift → further compromise of lung function. 🔹 Classic Clinical Features at Birth Respiratory distress immediately after delivery. Scaphoid abdomen (organs up in the chest). Decreased or absent breath sounds on the affected side. Barrel-shaped chest; mediastinal shift on CXR.
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rectum
Lymphatic drainage of the rectum proximal to the anal dentate line occurs via the inferior mesenteric and internal iliac lymph nodes. Areas distal to the dentate line drain primarily into the inguinal nodes. Most of the cutaneous lymph from the umbilicus down, including the anus below the dentate line, drains to the superficial inguinal lymph nodes. Exceptions are the glans penis and posterior calf, which drain to the deep inguinal nodes. External hemorrhoids, which originate below the dentate line, are covered by modified squamous epithelium and have cutaneous (somatic) nervous innervation from the inferior rectal nerve, a branch of the pudendal nerve. The inferior hypogastric plexus, which has both sympathetic and parasympathetic components, innervates the internal pelvic viscera (distal to the dentate line)
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Retroperitoneal
Retroperitoneal hematoma is a common complication of blunt abdominal trauma. The pancreas is a retroperitoneal organ, and pancreatic injury is frequently a source of retroperitoneal bleeding. The spleen, liver, stomach, and transverse colon are intraperitoneal organs. Lacerations or rupture of these organs can occur in blunt abdominal trauma, but these injuries would lead to hemoperitoneum (free blood in the peritoneal space), not retroperitoneal hematoma.
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anastomosis
The superior mesenteric artery and inferior mesenteric artery are the 2 main vessels supplying the small and large intestines. They are connected by a pair of anastomoses: the marginal artery of Drummond, which is the principal anastomosis, and the inconsistently present arc of Riolan (mesenteric meandering artery). متعرج
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HERNIA
Femoral hernias can present with groin discomfort and a tender bulge on the upper thigh inferior to the inguinal ligament, lateral to the pubic tubercle and lacunar ligament. The structure that lies immediately lateral to the hernia within the femoral sheath is the femoral vein. LATERLA TO MEDIAL NAVEL Incarceration and strangulation are common complications of femoral hernias. Direct inguinal hernias occur most commonly in older men due to weakness of the transversalis fascia. They protrude medial to the inferior epigastric vessels into the Hesselbach triangle and pass only through the superficial inguinal ring with no direct route to the scrotum. The inferior epigastric vessels are useful as a landmark during laparoscopic hernia repair to classify the type of inguinal hernia. Indirect inguinal hernias protrude through the deep inguinal ring into the inguinal canal lateral to the inferior epigastric vessels. In contrast, direct inguinal hernias protrude through Hesselbach's triangle medial to the inferior epigastric vessels. Surgical Considerations (Cesarean Delivery): Typically: midline vertical separation of rectus abdominis Horizontal transection may be done for space (fetal size/position) Important: inferior epigastric arteries must be ligated bilaterally to prevent hematoma
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CONSTIPATION AND defecation
Continence maintenance: Internal anal sphincter (IAS) – involuntary, tonic contraction. External anal sphincter (EAS) + puborectalis – voluntary control; puborectalis forms a sling that maintains an anorectal angle to prevent leakage. Initiation of defecation: Rectal distension → mechanoreceptors → involuntary IAS relaxation (rectosphincteric reflex) + urge to defecate. Voluntary relaxation of EAS & puborectalis + rectal contraction + abdominal muscle contraction → fecal expulsion. Dyssynergic defecation (failure to relax): Stool remains in rectum → chronic constipation, straining, small stools, manual disimpaction. Functional disorder, more common in elderly; also seen with neurologic disease (eg, Parkinson, MS) or pelvic trauma.
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Isolated Gastric Varices
Main Cause: Splenic vein thrombosis — often due to chronic pancreatitis, pancreatic cancer, or abdominal tumors. Mechanism: Splenic vein runs along posterior pancreas; thrombosis increases pressure in short gastric veins. These veins drain the fundus of the stomach → leads to gastric varices isolated to the fundus. Key Point: Rest of stomach and esophagus spared because they drain via different venous routes (eg, left gastric, azygos).
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esophagus
##Forceful retching can lead to superficial mucosal lacerations (eg, Mallory-Weiss tears) of the distal esophagus, an area that receives most of its arterial blood supply from branches of the left gastric artery. The proximal esophagus receives arterial blood from the inferior thyroid artery, whereas the midesophagus is supplied by branches of the thoracic aorta. ##Hiatal hernias occur when contents of the abdominal cavity herniate through the diaphragm at the esophageal hiatus into the thoracic cavity. Sliding hiatal hernias occur due to laxity of the phrenoesophageal membrane, leading to herniation of the gastroesophageal junction and proximal stomach, whereas paraesophageal hernias occur due to defects in the membrane, resulting in the gastric fundus herniation.
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Portal Triad & Pringle Maneuver
ringle Maneuver: Temporary occlusion of the hepatoduodenal ligament to stop blood flow through the portal triad. Used to determine the source of hepatic bleeding after trauma. Key Diagnostic Point: If bleeding stops → injury to portal triad vessels. If bleeding persists → injury to hepatic veins or inferior vena cava (not controlled by the Pringle maneuver). Note: Although the IVC is retroperitoneal, penetrating trauma can disrupt tissue barriers, causing bleeding into the peritoneal cavity.
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Cauda Equina Syndrome (CES)
Clinical Features: Progressive low back pain Bilateral lower extremity weakness Saddle anesthesia Bowel/bladder dysfunction (constipation, urinary retention) IMPORTANTT Etiology: Epidural metastasis (most common, e.g., from lung cancer) Disc herniation Trauma Pathophysiology / Nerve Involvement: Sciatic nerve: lower extremity weakness, radicular pain Pudendal nerve: saddle anesthesia Pelvic splanchnic nerves (S2–S4): parasympathetic loss → impaired peristalsis, bladder emptying, pelvic floor relaxation IMPORTANTTT
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biochem mainly , immuno , genetics and behavioral
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Which substances is most likely to have the fastest rate of metabolism in the glycolytic pathway?
Fructose-1-phosphate Dietary fructose is phosphorylated in the liver to F1P and is rapidly metabolized because it bypasses PFK-1, the major rate-limiting enzyme of glycolysis. Other sugars (eg, glucose, galactose, mannose) enter glycolysis prior to PFK-1 and as a result are metabolized more slowly
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Niacin Sources?
Pellagra (Niacin Deficiency) Definition: Pellagra = “rough skin”; caused by niacin (vitamin B3) deficiency. Classic Triad (3 Ds): Biochemistry: Niacin forms NAD & NADP, key coenzymes in redox metabolism. NAD: Coenzyme for dehydrogenases (fat, carbohydrate, amino acid metabolism). NADP: Hexose-monophosphate shunt & biosynthesis of cholesterol and fatty acids. Sources: Dietary niacin or endogenous synthesis from tryptophan. importanttt Common Causes of deficiency: Developing countries: Diets high in corn (bound niacin). Developed countries: Poor nutrition (alcoholism, chronic illness). Other causes: Carcinoid syndrome, isoniazid therapy, Hartnup disease.
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Lynch syndrome
Lynch syndrome is an autosomal dominant disease caused by abnormal nucleotide mismatch repair. The mismatch repair system involves several genes, including MSH2 and MLH1, which code for components of the human MutS and MutL homologs. Mutations in these 2 genes account for around 90% of cases of Lynch syndrome. LOOK TO THE PHOTO IN THE FILE Mismatch repair starts when the MutS homolog detects a mismatch on the daughter strand, identified by nicks. MutL homolog then joins, and the complex moves along the DNA until it reaches a nick. Exonuclease 1 is recruited to degrade the daughter strand past the mismatch, creating a gap that is stabilized by ssDNA-binding protein. After the complex dissociates, DNA polymerase δ synthesizes new DNA, and DNA ligase I seals the nick to finish the repair.
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Folate
Folate deficiency inhibits the synthesis of nucleic acids, particularly the formation of thymidine. This leads to defective DNA synthesis and increased apoptosis affecting hemopoietic cells (megaloblastic anemia). Thymidine supplementation bypasses the enzyme thymidylate synthase and can reduce erythroid cell apoptosis