Analysis of Haplotypes in Pedigrees
Identification of Rare Recombinant Haplotypes
What is the next step after identification of recombinant haplotypes?
Genetic Mapping of Polymorphic Markers With Respect to Inherited Conditions Requires That…
i) the condition shows clear Mendelian inheritance and high penetrance
ii) we have sufficiently large families with a genetic history of the condition
iii) we can identify recombinants within these families that allow us to locate a candidate gene
Are all conditions single gene traits?
Single Gene vs Multiple Gene Traits
Single Gene Traits
Single Gene vs Multiple Gene Traits
Multiple Gene Traits
International HapMap Project
-set up to develop a haplotype map of the human genome, the HapMap, which will describe the common patterns of DNA sequence variation
How many SNPs are there?
- the rarer SNP allele in each case has a frequency of at least 1% in the population so qualifies as a polymorphism
SNPs and Haplotypes
Haplotype Maps
Uses of Haplotype Maps
Starburst Chart
Reproductive Fitness and Selection
Example Study in Asia
Association Studies Between Haplotypes and Disorders
Microarray Chips
Affymetrix SNP-chip
Whole Genome Association to Identify Gene Underlying Common Disorders
Study Information
Whole Genome Association to Identify Gene Underlying Common Disorders
Results
Whole Genome Association to Identify Gene Underlying Common Disorders
Chron’s Disease and Type 1 Diabetes
Whole Genome Association to Identify Gene Underlying Common Disorders
Bipolar Disorder
Biobank
Inherited Disorders…
Genetic Counselling
-provides information and options for carriers of alleles causing disorders