Lecture 2 Flashcards

(32 cards)

1
Q

What are polymers?

A

Large molecules composed of multiple covalently linked building blocks called monomers.

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2
Q

What is an example of a polymer in daily life?

A

PET (polyethylene terephthalate), a common polyester.

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3
Q

What is the monomer of PET?

A

Ethylene terephthalate.

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4
Q

How is PET synthesized?

A

By mixing two precursors, applying heat (150–290°C), and removing byproducts like methanol.

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5
Q

Does PET store information like DNA, RNA, or proteins?

A

No, PET does not code for information.

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6
Q

What are proteins made of?

A

Amino acids.

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7
Q

What is the structure of an amino acid?

A

A central alpha carbon, an amino group, a carboxyl group, and a side chain (R group).

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8
Q

How are amino acids joined together?

A

Through a peptide bond formed between the carboxyl group of one amino acid and the amino group of another.

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9
Q

What is a polymer of amino acids called?

A

A polypeptide.

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10
Q

What is the backbone of a protein?

A

The linear chain of carbon and nitrogen atoms containing peptide bonds.

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11
Q

What are the ends of a protein called?

A

N-terminus (amino end) and C-terminus (carboxyl end).

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12
Q

Why are amino acids in proteins called residues?

A

Because they are bonded and no longer individual molecules.

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13
Q

How many amino acids are there, and how many are essential?

A

20 amino acids total; 9 are essential (must be obtained from diet), 11 are synthesized by humans.

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14
Q

How are amino acids classified?

A

Into hydrophobic, hydrophilic, and special amino acids.

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15
Q

Give examples of hydrophobic amino acids.

A

Alanine, Valine, Isoleucine, Leucine, Methionine, Phenylalanine, Tyrosine, Tryptophan. (MAVIL PTT)

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16
Q

Give examples of basic hydrophilic amino acids.

A

Basic: Lysine, Arginine, Histidine (LAH)

17
Q

Give examples of acidic hydrophilic amino acids.

A

Acidic: Aspartate, Glutamate (GA)

18
Q

Give examples of Polar uncharged hydrophilic amino acids.

A

Polar uncharged: Serine, Threonine, Asparagine, Glutamine (TAGS)

19
Q

Name all special amino acids and say what makes these amino acids ‘special’ (properties)?

A

Unique properties affecting protein structure:

Cysteine: forms disulfide bonds

Glycine: very small, fits tight spaces

Proline: introduces kinks in chains

(CGP)

20
Q

What are nucleic acids made of?

21
Q

What are the components of a nucleotide?

A

A pentose sugar, a phosphate group, and a nitrogenous base.

22
Q

What is the difference between DNA and RNA sugars?

A

DNA has deoxyribose (no OH at 2’), RNA has ribose (OH at 2’).

23
Q

What are the nitrogenous bases in DNA and RNA? And name the two categories of bases and their bases.

A

Purines: Adenine (A), Guanine (G)

Pyrimidines: Cytosine (C), Thymine (T, DNA only), Uracil (U, RNA only)

24
Q

How are nucleotides connected in DNA/RNA?

A

By phosphodiester bonds linking the 5’ phosphate to the 3’ hydroxyl of adjacent nucleotides.

25
What is the orientation of nucleic acids?
5’ end (phosphate) and 3’ end (hydroxyl).
26
Why is RNA less stable than DNA?
The 2’ OH in RNA can react with the phosphate group, breaking the chain.
27
How do purines and pyrimidines pair in DNA?
Adenine (A) pairs with Thymine (T) via 2 H-bonds; Guanine (G) pairs with Cytosine (C) via 3 H-bonds.
28
What is the structure of DNA?
Double-stranded right-handed helix, with bases inside and ribophosphate backbone outside.
29
What is the significance of the major and minor grooves?
Proteins read DNA sequences mainly via the major groove because it exposes unique chemical information.
30
How do amino acids and nucleotides show common ancestry?
All life uses the same 20 amino acids and nucleotides. Only L-amino acids are used in proteins.
31
What is conserved in the genetic code?
Codons for amino acids are preserved across species; moving a gene between organisms produces the same protein.
32
How is protein synthesis machinery similar across organisms?
The catalytic site of ribosomes is in rRNA, with highly conserved sequences.