Molec Bio Ch.8B Flashcards

Analyzing cells, molecules, and systems (cell culture and protein) (36 cards)

1
Q

tissue dissociation can be achieved through

A

mechanical disruption or enzymatic digestion

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2
Q

examples of mechanical digestion

A

mincing, trituration

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3
Q

examples of enzymatic digestion

A

trypsin, collagenase, dispase

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4
Q

primary culture

A

directly isolated from an organism; usually a tedious process

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5
Q

advantage of primary cultures

A

physiologically relevent

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6
Q

limitations of primary cultures

A

heterogeneous (cells of varying life stages), finite lifespan, senescence, differentiation

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7
Q

what is the limitation regarding medium for primary cultures?

A

we dont know the “perfect mix of nutrients, so we pack the culture with good stuff AND serum from the organism

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8
Q

what would happen if a primary culture was contaminated

A

cells could differentiate, which would create heterogeniality

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9
Q

disadvantage of mechanical disruption

A

possibility that not all contents will be disrupted

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10
Q

disadvantage of enzymatic digestion

A

it can alter/disrupt receptor proteins

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11
Q

eukaryotic cell lines

A

permanently established population of cells derived from a single ancestor (clonal) that can divide indefinitely in laboratory culture

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12
Q

strengths of cell lines

A
  1. homogeniality/standardization
  2. genetic manipulability
  3. large scale
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13
Q

limitations of cell lines

A

can differ from original tissue due to genetic drift, altered metabolism, and adaptation to artificial conditions

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14
Q

in cell lines, how can a cell culture change the cells?

A

a human cell cultures in cow serum will develop different characteristics

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15
Q

differential centrifugation

A

separate eukaryotic cellular components by centrifugation at increasing levels of speed

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16
Q

in a differential centrifugation, what would the palet consist of when spun at low speed?

A

nuclear portion

17
Q

in a differential centrifugation, what would the palet consist of when spun at medium speed?

18
Q

in a differential centrifugation, what would the palet consist of when spun at high speed?

A

small organelles

19
Q

in a differential centrifugation, what would the palet consist of when spun at very high speed?

A

proteins and macromolecules

20
Q

in differential centrifugation, after larger/denser components sediment first, sequential spins ca isolate ____

A

nuclei/mitochondria/membranes/cytosol

21
Q

cell fractionation by density gradients refine separation by

A

buoyant density

22
Q

velocity sedimentation

A

separation is based on size and shape; a sample is layered on a shallow sucrose gradient and forms distinct, collectable bands

23
Q

Equilibrium sedimentation

A

separation based on buoyant density; uses a steep density gradient, particles move until density of particle = density of the solution

24
Q

which has higher resolution: velocity sedimentation or equilibrium sedimentation

A

equilibrium sedimentation

25
cell-free extracts
active cellular machinery without intact cells; allows high experimental control
26
what are cell-free extracts used for?
1. DNA replication 2. TC 3. TL 4. Signaling
27
what are some limitations of extract systems
1. loss of compartmentalization 2. reduced spatial regulation 3. limited long-term dynamics
28
column chromatography
separation of sample based on the component's interaction with the matrix; proteins elute at different times
29
what are the three common types of machinery used for chromatography
1. ion exchange: separation by charge (charged beads) 2. gel filtration/size exclusion: hydrodynamic size (porous molecules) 3. affinity: specific binding interaction (enzyme binding)
30
SDS-PAGE
coat entire protein with SDS to induce a negative charge and run a gel to differentiate by protein size
31
b-mercaptoethanol
a reducing agent that breaks disulfide bonds
32
two-dimentional gel electrophoresis
consists of two steps: focusing and PAGE; proteins are separated by pH AND size
33
focusing in 2D gels
proteins are separated by their isoelectric points by isoelectric focusing in the horizontal dimention
34
PAGE in 2D gels
further fractionated according to their mass by electrophoresis from top to bottom in the presence of SDS
35
proteomics
large scale studies of entire population of proteins in cells
36
western blotting
after gel electrophoresis, target proteins are transferred to a membrane and probed with a primary antibody for labeling, and then with a second antibody for identification. proteins that are not bound to antibodies are washed away