Phylogeny
evolutionary history of species and how they’re related.
Three-Domain System
classification dividing life into Bacteria, Archaea, Eukarya.
Metagenomics
sequencing DNA from environmental samples to identify unculturable microbes.
Bacteria
prokaryotes with peptidoglycan cell walls and huge metabolic diversity.
Archaea
prokaryotes without peptidoglycan; often extremophiles; no known pathogens.
Proteobacteria
major Gram-negative group including photoautotrophs, heterotrophs, and many pathogens.
Alphaproteobacteria
subgroup containing ancestors of mitochondria.
Betaproteobacteria
subgroup including soil nitrifying bacteria.
Gammaproteobacteria
includes E. coli, Salmonella, Vibrio, Yersinia pestis.
Deltaproteobacteria
includes predatory Bdellovibrio.
Epsilonproteobacteria
includes ulcer-causing Helicobacter pylori.
Neisseria gonorrhoeae
Gram-negative pathogen causing gonorrhea.
Helicobacter pylori
bacteria causing stomach ulcers.
Bdellovibrio
bacteria that drill into and kill other bacteria.
Chlamydias
obligate intracellular parasites lacking peptidoglycan walls (e.g., Chlamydia trachomatis).
Spirochetes
spiral bacteria moving by internal filaments (e.g., Borrelia causing Lyme disease).
Cyanobacteria
photoautotrophs producing oxygen; ancestors of chloroplasts.
Great Oxygenation Event
atmosphere-changing oxygen rise caused by cyanobacteria.
Deinococcus radiodurans
extremely radiation-resistant bacterium.
Gram-positive bacteria
large group including soil decomposers and pathogens; many produce antibiotics. (Bacillus, Clostridium, Streptomyces, Actinomycetes, Mycoplasmas)
Actinomycetes
soil bacteria forming colonies; major source of antibiotics.
Streptomyces
soil bacteria producing natural antibiotics.
Bacillus anthracis
Gram-positive pathogen forming endospores; causes anthrax.
Clostridium
Gram-positive anaerobes forming endospores (botulism, tetanus, C. diff).