Lecture 5 Flashcards

(78 cards)

1
Q

What is extracellular signalling?

A

The process by which cells communicate with each other using signalling molecules.

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2
Q

Why is signalling fundamental in multicellular organisms?

A

It coordinates activities essential for survival and proper organism function.

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3
Q

What cellular functions depend on extracellular signalling?

A

Response to environment, growth and development, homeostasis, immune responses, and metabolism.

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4
Q

What enables a cell to respond to a signal?

A

Specific receptor proteins.

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5
Q

Why must receptors have high affinity for signalling molecules?

A

Because signalling molecules may be present at very low concentrations.

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6
Q

What determines receptor specificity for a signal?

A

The three-dimensional structure of the receptor protein.

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7
Q

How can extracellular signals act over long distances?

A

They are secreted and diffuse through the extracellular environment.

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8
Q

How can extracellular signals be localised?

A

They remain associated with the signalling cell or extracellular matrix.

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9
Q

what are the 2 versions of localised signalling?

A

Signals can be membrane-bound or tightly associated with the extracellular matrix.

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10
Q

What is juxtacrine (contact) signalling?

A

Signalling that requires direct contact between signalling and receiving cells.

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11
Q

What is paracrine signalling?

A

Secreted signals acting over a few cell diameters.

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12
Q

What is autocrine signalling?

A

Signals that act on the same cell that produced them.

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13
Q

What is synaptic signalling?

A

A specialised form of paracrine signalling involving neurotransmitters at synapses.

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14
Q

What is endocrine signalling?

A

Hormones produced locally but transported systemically through the organism.

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15
Q

What types of molecules act as signalling molecules?

A

Peptides, small molecules, metabolic products, and lipids.

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16
Q

Give examples of peptide signalling molecules.

A

Insulin and VEGF.

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17
Q

What are small molecule signalling examples?

A

Nitric oxide (NO).

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18
Q

Why is nitric oxide used for short-range signalling?

A

It is short-lived and breaks down rapidly.

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19
Q

What are metabolic product signalling molecules?

A

Non-gene-encoded molecules produced by enzyme pathways, such as steroids.

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20
Q

What are lipid signalling molecules like?

A

Membrane-bound molecules such as phospholipids.

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21
Q

what is the process of the use of nitric oxide during vasodilation?

A

-endothilial cells release nitric oxide synthase due to NOS3, increase nitric oxide.

-platelets and smooth muscle cells release guanuylyl cyclase due to GUCY1A3

-this increases cGMP which then causes vasodilation, reduced blood pressure and effects of the nitric oxide continue downstream

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22
Q

What determines the range and persistence of a signal?

A

The type of signalling molecule.

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23
Q

Why must signalling be terminated?

A

To prevent continuous activation of the pathway.

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24
Q

How can signalling be terminated by receptor internalisation?

A

The receptor is brought into the cell and can no longer respond to the signal.

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25
How can signalling be terminated by degradation?
Signalling molecules or receptors are enzymatically broken down.
26
What is feedback inhibition in signalling?
activation of the receptor downstream leads to feedback loops that makes the receptor less responsive to activation
27
What are the main features of extracellular signalling?
Receptors, type of signalling, signalling molecules, and termination mechanisms.
28
Why do hydrophobic and hydrophilic signals use different receptors?
Hydrophillic can flow around bloodstream / cytoplasm when hydrophobic cannot.
29
how do hydrophobic molecules move? can they pass through the membrane?
they require globular/ carrier proteins to move around and they CAN pass through the membrane
30
Why do hydrophilic molecules require membrane receptors?
They cannot cross the plasma membrane.
31
Why are hydrophilic signal transduction pathways often complex?
The signal must be relayed through multiple intracellular steps.
32
Why can hydrophobic molecules have simpler signalling pathways?
They can cross membranes and bind intracellular receptors.
33
How are hydrophobic signalling molecules transported in the blood?
By carrier proteins.
34
Where are receptors for hydrophobic signals found?
In the cytoplasm or nucleus.
35
Give examples of hydrophobic signalling molecules.
Steroid hormones, thyroid hormones
36
Why do hydrophobic signals often mediate long-term signalling?
They persist longer in the body.
37
Why are hydrophilic signals used for rapid signalling?
They are rapidly degraded.
38
What are steroid hormones synthesised from?
Cholesterol.
39
Are steroid hormones proteins or peptides?
No, they are small organic molecules.
40
What is special about nuclear hormone receptors?
They are both receptors and transcription factors.
41
What state are nuclear receptors in without ligand?
Inactive, often bound to heat shock proteins.
42
What happens when a ligand binds a nuclear receptor?
The receptor changes shape, releases inhibitors, and activates transcription.
43
how does steriod hormone receptors work?
eg estrogen receptor in absence of an estrogen hormone binds to the Gene, estrogen hormone then binds to the receptor causes the Gene to be expressed at a high level
44
What are effector proteins?
The target proteins whose activity changes in response to signalling.
45
What types of effector proteins exist?
Metabolic enzymes, transcription factors, and cytoskeletal proteins.
46
What is a signal transduction pathway?
A series of steps passing a signal from receptor to effector proteins.
47
Why are signal transduction pathways often complex?
They include branching, feedback, and multiple regulatory steps.
48
What are molecular switches in signalling pathways?
Proteins that exist in on or off states.
49
What is Dishevelled an example of?
A molecular switch in signalling pathways.
50
What is the Wnt signalling pathway important for?
Embryonic development and adult tissue regeneration.
51
Where does adult Wnt signalling remain important?
Bone marrow, skin, and intestines.
52
What activates the Wnt pathway?
Wnt binding to the Frizzled receptor.
53
What happens after Wnt activates Frizzled?
the membrane changes shape thenDishevelled is activated and also changes shape
54
What does Dishevelled inhibit?
The β-catenin destruction complex.
55
What happens to β-catenin when the destruction complex is inhibited?
It becomes stabilised.
56
What does stabilised β-catenin do?
Activates TCF transcription factors.
57
How is Wnt signalling altered in colorectal cancer?
The pathway is hyperactivated.
58
Which gene is often mutated in colorectal cancer?
APC (Adenomatous Polyposis Coli).
59
Why is APC a tumour suppressor?
It attenuates Wnt signalling to control cell proliferation and ensures cell grow
60
What experimental method measures transcription factor binding to DNA?
ChIP-qPCR.
61
What does ChIP stand for?
Chromatin Immunoprecipitation.
62
What do peaks in ChIP-Seq data represent?
Regions where the transcription factor binds DNA and showing the idea that the promotor being bound will cause activation of a Gene
63
What is the chIP - qPCRprocess of measuring the binding of TF?
-crosslink cells to genes = mix all TF -carry out lysis -bind to antibodies -immunoprecipitation -wash -crosslink reversal -DNA purification and quantative PCR and then analyse the DNA binding to compare control.
64
Why are signal transduction pathways amplified?
One receptor can activate many downstream molecules.
65
How does amplification occur?
One receptor activates enzymes. the activated enzymes then may activate many other proteins and generate secondary messenger molecules
66
What is integration in signalling pathways?
Signals from 2 receptors allow multiple pathways to connect and influence the same output.
67
Why is integration important?
It allows coordination and regulation between pathways.
68
What does multi-level regulation mean in signalling?
Pathways can be controlled at several points.
69
Give examples of regulation points in Wnt signalling.
Frizzled expression, β-catenin stability, TCF cofactors, pathway crosstalk.
70
What is protein phosphorylation?
The addition or removal of phosphate groups on proteins.
71
Why does phosphorylation act as a molecular switch?
It changes protein structure and activity.
72
Which amino acids are commonly phosphorylated?
Serine, threonine, and tyrosine.
73
Why does phosphorylation alter protein behaviour?
Phosphate groups are highly charged.
74
What are protein kinases?
Enzymes that add phosphate groups to proteins.
75
What determines kinase specificity?
The amino acid sequence surrounding the target residue.
76
What are protein phosphatases?
Enzymes that remove phosphate groups.
77
Are phosphatases more or less specific than kinases?
Generally less specific.
78
Why is phosphorylation not simply on/off?
Multiple sites can create graded responses like a dimmer switch.