What are nucleic acids linked by?
phosphodiester bonds
What are the different forms of DNA?
A: right handed, 26 A diameter
B: Right handed, 20 A diameter
Z: Left handed, 18 A diameter
Which angles are constrained in DNA?
glycosidic bond angle and sugar-phosphate backbone angles
How can we measure the physical properties of DNA?
Melting temperature increases as %GC increases
Why does RNA use uracil?
use thymine to avoid issues, due to cytosine deaminates
Why can RNA not form a B helix?
steric clashes
Can RNA be stabilized by non-Watson-Crick base pairing?
Yes
What is the acid-base catalysis in Hammerhead Mechanism?
G-12 nitrogen is the base
G-8 hydroxyl group is the acid