taxonomy
scheme of classification of organisms based on evolutionary relationships (most recent common ancestry)
carl linnaeus
organized organisms into hierarchical
classification systems in mid-
18th century
proposed kingdom, class, order, genus, species (missing domain, family and phylum)
binomial nomenclature for each
species. e.g., Homo sapiens
what are rules of binomial nomenclature for species
ex. Homo sapiens
first word = genus
second word = species
always italicized, if not then underlined
genus is always capitalized, species is always not
latin names should have what 3 characteristics
uniqueness - no 2 species should have the same name
universality - everyone should use the same naming convention to refer to a species
stability - once a species has been named, it should not be changed
breakdown origin of term phylogenetics
phylo: greek for tribe -> group
genetics: greek - “genesis” and latin for origin
5 kingdoms
protists - algae, mucus
monerans - bacteria
fungi - mushrooms, yeast
plants - trees, ferns, moss
animals - insect, horse, squid, sponge
domains of life
monerans:
1. bacteria
2. archaea
- methane rich environments (-methano), high temp environments (-thermo, -pyro), and salt loving (-halophiles)
non-monerans
3. eukaryota
extant vs extinct
extant -> alive
extinct -> dead, non-existent
taxon
group of organisms
sister taxon
evolutionarily most closely related groups of organisms
taxa
plural of taxon
node on a phylogenetic tree
shared ancestor
ancestral vs derived
ancestral: less recent ancestor
derived: more recent ancestor
** relative terms
monophyly
common descent from a single ancestor
a monophyletic group includes an ancestor and ALL of its descendents
paraphyly
refers to a group that includes an ancestor and some but not all of its decendents
polyphyly
refers to a group that does not include their common ancestoor
synapomorphy
derived trait shared by 2+ taxa and postulated to have been inherited from their common ancestor
also referred to as a “shared derived character”
ex. the node between vertebrata and gnathostomata, from there on out, all organisms on the tree have jaws
name the subphyla
vertebrata
tunicates
cephalochordates
gnathostomata
“jawed” “mouths”
osteichthyes
bony fishes
“oste” -> bones
chondrichthyes
“cartilage”
sharks, rays, chimaeras
chondri
cartilate
oste
bones
ichthyes
fish