Unit 4 Flashcards

(126 cards)

1
Q

Plant cell ultrastructure: shared organelles with animal cells

A

eukaryotes
Golgi apparatus, mitochondria, ribosomes, cell membrane, vacuole, nucleus, cell wall, chloroplast, cytoplasm
rough and smooth endoplasmic reticulum spread throughout the cytoplasm

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2
Q

Cell Wall

A

Plant cells are mostly rectangular => shaped by cell wall which gives the cell strength and support
made of insoluble cellulose
freely permeable to everything that dissolves in water
Suberin is added to the cell wall in cork tissues
Lignin is a part of cell wood structure in wood
=> those compounds reduce the permeability of the cell wall so that water and dissolved substances cannot pass through it

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3
Q

Primary Cell Wall

A

Primary Cell Wall: Middle lamella => made when a plant cell divides into two new cells (made of pectin which holds the cell walls of adjacent plant cells together - has lots of negatively charged carboxyl(-COOH) groups and these combine with positive Ca2+ = calcium pectate ⇒ binds to the cellulose on either side - cellulose microfibrils and the matrix build up on both sides of the middle lamella - all arranged in a similar direction

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4
Q

Secondary Cell Wall

A

Secondary cell wall builds up, with the cellulose microfibrils laid densely at different angles to each other => more rigid + hemicelluloses harden it further
=> In WOOD = lignin is then added

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5
Q

Draw beta-glucose

A

check

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6
Q

Cellulose: structure, bonding and structure, function, digesting cellulose

A

CELLULOSE = made of beta-glucose
units are inverted so bonding can take place
hydroxyl(-OH) groups stick out on both sides of the molecule
⇒ hydrogen bonds can be made between the partially positively charged hydrogen atoms of the hydroxyl groups and the partially negatively charged oxygen atoms = CROSS-LINKING and it holds neighbouring chains closely
Join in forms microfibrils -> deposited in layers which are held together by a matrix of hemicelluloses and other short-chain carbohydrates => binding to each other and to the cellulose molecules

=> increases its strength
=> don’t coil, remain long, straight chains
=> most animals do not possess the enzymes needed to break the 1,4-glycosidic bonds between the molecules of β-glucose, so they cannot digest cellulose
=> ruminant animals use the cellulose-digesting enzymes from bacteria living in their gut to digest their food

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7
Q

Plasmadesmata

A

PLASMODESMATA
special cytoplasmic bridges via which the substances are exchanged in primary cell wall
Is produced as the cells divide - two cells do not separate completely, and threads of cytoplasm remain between them => pass through gaps in the newly formed cell walls and signalling substances can pass from one cell to another through the cytoplasm
cell walls are thinner in the region of the plasmodesmata
SYMPLAST - interconnected cytoplasm of the cells

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8
Q

Pits

A

PITS - when secondary thickening takes place, area around the plasmodesmata is unaffected, leaving it thin
-> no cytoplasm in the xylem cells but the pits allow water to move between the xylem vessels => maintaining a flow of water at even pressure through the plant.

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9
Q

Permanent Vacuoles

A

any fluid-filled space inside the cytoplasm which is surrounded by a membrane
can be found in animal cells, but are TEMPORARY
surrounded by a specialised membrane = TONOPLAST -> contains many different protein channels and carrier systems; controls the movements of substances into and out of the vacuole + water potential of the cell
is filled with cell sap, a solution of various substances in water => causes water to move into the cell by osmosis ⇒cytoplasm is kept pressed against the cell wall (cell stays turgid)
used to store several different substances => can store pigments or proteins in the cells of seeds and fruits + contain lytic enzymes
often store waste products

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10
Q

Chloroplasts

A

almost all plant cells contain the genetic information to make chloroplasts (exc parasitic plants
Cells in flowers, seeds and roots contain no chloroplasts and neither do the internal cells of stems or the transport tissues

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11
Q

Chloroplast vs mitochondria

A

are large organelles - they have a biconvex shape
contain their own DNA
are surrounded by an outer membrane
have an enormously folded inner membrane that gives increased SA where enzyme-controlled reactions take place
are thought to have been free-living prokaryotic organisms that were engulfed by and became part of other cells

are the site of photosynthesis vs site of respiration
contain chlorophyll vs don’t

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12
Q

Amyloplast

A

specialised plant organelle
Are colourless and store starch => starch can be converted to glucose and used to provide energy when the cell needs it
Large numbers of amyloplasts are found in areas of plants that store starch

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13
Q

Draw chloroplast structure

A

check

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14
Q

Epidermis

A

Epidermis - outer layer, protects the cells beneath it
-> cutin - waxy substance secreted from the cells to reduce water loss
-> hairs - to trap the warm air and reduce heat loss

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15
Q

Collenchyma

A

Collenchyma - below epidermis, have thick cellulose primary cell walls => strength + support, but remain living so they stretch as the plant grows and provide flexibility

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16
Q

Sclerenchyma

A

Modified parenchyma
strong and flexible
fibres are associated with the vascular bundles and provide support to a stem
consist of bundles of dead cells which form long, hollow tubes, but they do have end walls present
lignification of cell walls occur in spiral/ring structure, which provides structural support to allow the plant to bear the load of its own mass
have more cellulose in their secondary cell walls positioned at right angle at each other compared to other plant cells

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17
Q

Parenchyma

A

Parenchyma cells - most common plant cells (unspecialised = can be modified to develop into other cells), act as packing for the other tissues, protecting them, can be used for storage and photosynthesis

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18
Q

Draw a stem structure

A

check

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19
Q

Xylem

A

transports water and minerals

cell walls contain lignin, which enables the vessels to withstand the pressure created by the moving column of water
form long, hollow straw-like structures that are formed by dead cells (due to lignification of cell walls)
do not contain any cytoplasm or organelles that could slow down the flow of water
small regions in the walls that are not lignified, known as pits, which allows for lateral movement of water and minerals between xylem vessels

water moves up against the gravity
Water moves out of the xylem into the surrounding cells through the specialised pits in the walls of the xylem vessels

unidirectional

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20
Q

Protoxylem

A

xylem starts off as living tissue => protoxylem - it can stretch and grow because the walls are not fully lignified (cellulose microfibrils are arranged vertically in the stem) = increases the strength of the tube and allows it to resist the compression forces from the weight of the plant pressing down on it

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21
Q

Metaxylem

A

Increasing amounts of lignin are incorporated into the cell walls as the stem ages and the cells stop growing => cells become impermeable to water and other substances. = becomes stronger and more supportive => metaxylem, endwalls between the cells mostly break down so the xylem forms hollow tubes

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22
Q

Development of xylem diagram

A

check

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23
Q

Structures and functions of the xylem

A

Lignified cell wall - strength to withstand hydrostatic pressure so that the vessels don’t collapse, impermeable to water
No end plates - allow mass flow, cohesive and adhesive forces are not impeded
No protoplasm - doesn’t impede with the mass flow
Pits in the wall - lateral movement of water, allows for continuous flow in case an air bubble forms
Small diameter of vessel - prevents water columns from forming, assist with capillary function

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24
Q

Phloem

A

transports sugars (in form of sucrose) and proteins (in form of amino acids) => organic compounds are dissolved in water to form sap => TRANSLOCATION

composed of living cells which forms a non-hollow tube => its bulk is made up of sieve tube (walls between the cells) elements which are the main conducting cells and companion cells

Phloem sap moves through the sieve pores in the end walls of each sieve tube cell

bidirectional

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25
Sieve Tube Elements: structure and function
Sieve Plates with sieve pore = continuous flow of organic compounds Cellulose cell wall = strengthens the wall to withstand for hydrostatic pressure that moves the assimilates No nucleus, ribosomes, vacuole in mature cells = maximises the space for translocation Thin cytoplasm = reduced friction to
26
Companion Cells
Each sieve tube element has a companion cell associated with it as companion cells by many plasmodesmata => control the metabolism of their associated sieve tube member They also play a role in loading and unloading of sugars into the phloem sieve tube elements their cell membrane have many infoldings => large SA for transportation of sugars into cell cytoplasm
27
Companion Cells: structure and function
All organelles present = provide metabolic support to sieve tube elements and helps with loading/unloading the assimilates Transport the proteins in plasma membrane = moves the assimilates in and out of the sieve tube Large number of mitochondria = provide ATP for active transport of assimilates in and out of companion cells Plasmadesmata = link to sieve tubes elements to allow the assimilates to move to and from companion cells and sieve tube
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Vascular Bundle in STEM + draw it
xylem and phloem grouped together in areas arranged in a circle around the outer part of the stem xylem - towards the middle of the stem => to provide support for the stem to stand upright, allowing leaves to get the most sunlight energy phloem - towards the outer edge of the stem => to shorten the diffusion distance allowing minerals/glucose/AA to reach living cells for respiration/growth
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Vascular Bundle in LEAF + draw it
xylem - at the top of the leaf => to provide support for the leaf to stand upright (not hanging loosely), allowing leaves to get the most sunlight energy phloem - at the bottom of the leaf => providing nutrients for the respiring cells in the leaf
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Vascular Bundle in ROOT + draw it
xylem - cross-like in the middle of the root => to provide support for the root to grow thru the dense soil (bore through), allowing root hair cells to absorb as much water/minerals as possible phloem - at the outside-ish of the root => providing nutrients for the respiring cells in the root
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Transpiration
The loss of water by evaporation from the leaves of plants
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Root Cells adaptation to transpiration
To absorb water and ions (magnesium and nitrates) from the soil Water moves in by osmosis, mineral ions move in by active transport (ATP needed hence loads of mitochondria in the cell) Projection on the side -> large SA:V ratio -> rate of absorption is great
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Cohesion and adhesion
Water molecules form hydrogen bonds with other water molecules -> cohesion Water molecules form interactions with other substances -> adhesion
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Transpiration Pull
- when the evaporation of water move the rest of the water molecules up the stem due to cohesion Water is absorbed into the root hair cell by osmosis because of a concentration gradient caused by the active transport of the mineral ions This is where water moves from the region of high water potential to a region of low water potential through a partially permeable membrane It then moves through the root from the root hair cell into the cortex and then into the xylem by osmosis It moves up the xylem to the leaves This happens because the water molecules form hydrogen bonds between each other which attach them together -> cohesion It also moves because it attaches to the walls of the xylem -> adhesion Once it gets to the leaves, it will move into the spongy mesophyll cells, this pulls the rest of the water up the xylem It then evaporates from the surface of mesophyll cells into the air spaces in the leaf It leaves the stomata by diffusion Transpiration ‘pulls’ on the water (cohesion) in the xylem to replace the water that has been lost (due to evaporation) -> more water enters the root hair cell (as there is a concentration gradient created)
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Factors affecting transpiration
Wind speed/ air movement: High -> water vapour is removed from the surrounding air -> concentration gradient is created between the leaf and air -> greater rate of transpiration Low -> water vapour isn’t removed -> concentration gradient between the air and the leaf is reduced -> smaller rate of transpiration Light Intensity: High -> guard cells open the stoma for gas exchange, allowing water vapour to diffuse out -> greater rate of transpiration Low -> guard cells close the stoma, water vapour can’t diffuse out -> smaller rate of transpiration Temperature: High temp. -> particles have more KE, more chances of the bonds breaking -> they evaporate and diffuse out of the stoma faster -> greater rate of transpiration Low temp. -> particles have less KE, they evaporate and diffuse out of the stoma slower -> smaller rate of transpiration Humidity: High humidity -> concentration gradient reduced as the air is saturated with the water vapour -> smaller rate of transpiration Low humidity -> concentration gradient is steep as the air isn’t saturated with the water vapour -> greater rate of transpiration
36
Cell Fibres RECALL
middle lamella => made of pectins which joins the cell walls of adjacent plant cells together sclerenchyma => cells with thickened cell wall which is used for strength and support hemicellulose => polysaccharides, contains diff sugars parenchyma => unspecialised plant cells that act as packing in stems and roots to give support collenchyma => cells with area of cellulose thickening sclereids => sclerenchyma cells that are completely impregnated with lignin cambium => unspecialised plant cells that divide to form both the xylem and the phloem
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Inorganic Ions for plants
Mg 2+ - chlorophyll, deficiency = wilting, yellowing at vein; synthesis of nucleic acids, activation of plant enzymes Nitrates - AA (amine group made of nitrogen), DNA, RNA, ATP, deficiency = wilting, yellowing Potassium - activate enzymes Phosphates - DNA, RNA, ATP Calcium - calcium pectate in the cell wall in middle Pamela, imp for membrane permeability, deficiency = yellowing + crinkling Water - photosynthesis, latent heat of vaporization = evaporation for regulates heat, needed for support to keep plant upright due to turgid cells (tension), transpiration stream (cohesion + adhesion) = transport medium
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Plant fiber uses
cellulose fibres have a high strength => further toughened with lignin => wood ropes (flax), papers, clothes (cotton - exists as nearly pure cotton fibres hence no need for retting) => rely of retting - actions of natural decomposers to break down the material around the fibers extracted long sclerenchyma cells and xylem tissue => tough, strong, not easily digested by enzymes/ chemicals (matrix of pectates and other compounds can usually be dissolved and removed) great tensile strength (CP8) = don’t snap easily under tension + flexible + exist in bundles alr so are more tough
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Cotton fibres vs synthetic fibres
single cotton fibre cells are very long, they are not long enough to be useful on their own => spinning pulls out the short, single fibres and twists them together to form a long, continuous threads - woven together to make a fabric synthetic fibres => quite cheap, very hardwearing and did not crease, BUT do not 'breathe' and they do not absorb body fluids such as sweat, made from chemicals from crude oil, a non-sustainable resource which gets increasingly expensive and is rapidly declining.
40
Wood
Wood is a composite material, made of lignified cellulose fibres embedded in hemicelluloses and lignin cellulose fibres make the wood very resistant to compression = weight-bearing in buildings and can be used in supporting columns as well as in horizontal beams also keeps some of the matrix flexibility and, because of the intermeshing cellulose fibres, it doesn't crack in the way that a stiff material does (hammering/ cutting) good insulator => homes crabon neutral even if burnt, lock CO2 up
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Paper made from wood
Wood fibres are not easy to extract because the matrix around the cellulose fibres contains much lignin So wood is soaked in very strong alkalis such as caustic soda to produce a pulp which consists of cellulose and lignified cellulose fibres in water Thin layers of pulp are then pressed onto frames where they dry to make paper
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Plant-based polymers
Carbon Neutral Renewable (can be replanted)/ sustainable Cellulose fibres used => can be grown easily (eg maize) No greenhouse/toxic gasses released Biodigradable Biofuels Bioplastics => burning can generate electricity, more expensive Lack of strength/ durability Take up agricultural land Slow natural decomposition Deforestation to accommodate this Reduces biodiversity
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Oil-based polymers
Cheaper production as there’s established technology + staff + technique Strength/ durability Some can be burnt, but most can’t Release greenhouse gasses More difficult and expensive in long run (compared to when plant-based polymers technique will be more advanced ) Political instability
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Cellulose-based plastics
Cellulose-based plastics are usually made from wood pulp: mainly used to make plastic wrapping for food (cellophane)
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Thermoplastic starch
Thermoplastic starch is made mainly from starch which is extracted from potatoes and maize, then mixed with other compounds such as gelatine, which change the properties of the starch: making capsules to contain drugs; smooth, shiny and easy to swallow, yet it absorbs water and is readily digested
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PLA
Polylactic acid (PLA) has similar properties to polyethene but is biodegradable: used for computer casings, mobile phones and drinking cups
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PHB
Poly-3-hydroxybutyrate (PHB) is a stiff biopolymer rather like polypropylene: used in ropes, bank notes and car parts
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Therapeutic from plants
plants have antiseptic compounds and antibiotics can be exploited by humans to develop new drugs to treat bacterial and fungal diseases
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Antimicrobial definitions
Antimicrobial - substance will either kill microbes (i.e. bacteria) or prevent their growth
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Culture definition
Culture - grow large populations of bacteria so they can be measured in some way
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Bacterial Growth
often used in studies to test the antimicrobial properties of substances reproduce by binary fission Conditions: nutrients, which provide them with the materials needed to grow and respire those that respire aerobically will need a sufficient supply of oxygen temperature and pH of the environment must not be too high or too low to allow enzymes that control metabolic processes to function optimally
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Gossypol
in cotton plants antiseptic for seed protection
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Aspirin
extracted the active ingredient (salicylic acid) from willow bark acetylsalicylic acid = aspirin, for pain relief
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Quinine
sourced from the cinchona tree used to treat and prevent malaria
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Adv and Disadv of using herbs for therapeutics
Ability to produce medication that contains a known concentration of the active ingredient Reliable dosage of medication Creation synthetic versions of the compound in a laboratory => reduces the need to remove large amounts of plant material from the environment Modifications can be made in the laboratory to make the active ingredient more effective loss of biodiversity/ high demand for cutting down large amounts of plants
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Foxgloves + dropsy
Foxgloves -> poisonous leaves when eaten by humans/ animals dizziness vomiting diarrhoea hallucinations heart failure -> irregular heartbeat => used as treatment for dropsy (accumulation of fluid in the bodily tissue -> heart and kidney problems, tissue fluid fails to return to the capillaries and so builds up in patients’ organs => deaths due to eventual drowning due to fluid accumulation in lungs) High BP -> forces water and minerals out through the endothelial pores in the capillaries Water potential in the blood is reduced Water is supposed to move back in by osmosis down the conc gradient BUT it cannot due to high BP Tissue fluids remain in tissue and cannot move back in
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William Withering
William Withering -> knew a lady who made a tea with foxgloves that seemed to cure dropsy, tried his own recipe of the tea with increased conc of the foxgloves = death of a patient, quits and starts working in the hospital, restarts his trials => gives foxgloves extract until the patient starts to vomit/ diarrhea and then reduced the dosage a bit => worked! Chemical Extracted: digitalis
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Drug Testing
10-12 years and $1.3 billion effective, safe, stable, easily manufactured on large scale, easily absorbed and removed from the body
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Placebo
Placebo - benign substance “dummy drug”, prevent Placebo Effect from skewing results, existing drug to make comparison against
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Double-blind trials
Double-blind trials - neither the doctor nor the patient know who is receiving the drug
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Drug Testing: timeline
Cell Cultures, tissues and whole organs Animal testing (usually mice and rats) Clinical Trials 1: small number of healthy volunteers => unexpected side-effect? Clinical Trials 2: 100-500 volunteers with targeted disease => ideal dose, effectiveness, side-effects? Clinical Trials 3: over 5000 with targeted disease => safety + effectiveness? Post-market surveillance: ppl’s experience with using drugs, abnormal side-effects, re-assessments
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Classification
Classification - systematic organizing of organisms into groups within groups which are distinct and non-overlapping cellular structure/ molecular DNA => hard to sample + expensive physical features (morphology) => analogous features Mode of nutrition Reproduction methods -> recognition niche/ environment => multiple habitats, migration
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Need for classification
evaluation (gradual change over many generations) = great variety + biodiversity morphological approach analogous features - look similar but not necessary from the same origin (homologous structure - genuine common ancestry)
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Taxonomy and Taxon
Taxon - unit of classification Taxonomy - science of classification, describing and naming organisms
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Classification flow chart
Domain -> kingdom -> phylum/ division -> class -> order -> family -> genus -> species
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3 domains
Domain Archaea: contains 1 kingdom = archaebacteria (ancient bacteria that usually are extremophiles - can survive in extreme conditions, reproduce asexually) Domain Bacteria: has 1 kingdom = eubacteria + Cyanobacteria -> reproduce asexually, hence cannot conclude if they produce fertile offsprings -> horizontal flow of genes Domain Eukarya: has 4 kingdom = plants (autotrophs), animals (heterotrophs, sexual), fungi (heterotrophs, sexual/asexula reproduction) and protoctista
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Who discovered 3 domains
Woese - Worked on RNA sequencing in 1960s proposed Archaea 1990 proposed a phylogenetic tree based on three domains- Archaea, Bacteria and Eukarya Before => all prokaryotes were in MONERA
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Archeabacteria
Archae = reproduce by binary fission (controlled within cell cycle similar to eukarya) -> membrane structure and membrane proteins are different from eukarya and bacteria -> extra ester link in their lipids, giving branched molecules = extra strength in extreme environment -> no peptidoglycan wall -> same initiator tRNA as in eukaryotes
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Binomial System
Binomial System - Latin/Greek names First name = generic name (GENUS) Second name = specific name (SPECIES)
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Artificial Classification
physical characteristics same functions, but not the same evolutionary origin
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Evolutionary Classification
based upon evolutionary relationships shared features derived from their ancestors arranges groups into hierarchies
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Molecular Phelogeny
Molecular Phelogeny - use of molecular data, specifically DNA, RNA, and protein sequences, to infer evolutionary relationships among organisms
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Simple Hierarchy vs Phylogenetic Trees
-> Simple hierarchy more namings, length of the lines doesn’t mean anything -> Phylogenetic System how long ago the common ancestor was, less naming, works for some multicellular organisms only (extinct animals?), hard to collect DNA
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Endosymbionts: mitochondria and chloroplast
1. Prokaryotic organism is engulfed 2. By chance is not digested 3. Provides advantageous characteristics to the organism 4. Becomes permanent feature of the cell and are passed on during cell division
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Species
A group of organisms which inbred for long enough to have a very similar genetic makeup (similar antigens/ similarity in immune system/ similar development pattern) behave and look similarly share common ancestry occupy the same niche when reproduced can produce a living, fertile offspring any of the genes of a species individuals can be combined with any other (ie they belong to the same gene pool)
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Morphological Species Model
Morphological species model - based on features and phenotypes only -> great variety due to genetic variation -> different species having analogous features -> sexual dimorphism
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Reproductive Species Model
Reproductive species model - a group of organisms with similar characteristics that interbreed to produce fertile offsprings a group of organisms in which the genes can flow between individuals -> same species can occupy different niches -> horse + donkey = mule (sterile), lion + tiger = liger (fertile) => Hybrids? -> doesn’t work for plants and bacteria -> observing reproduction, is the offspring from the event, judging fertility -> extinct species
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Ecological Species Model
Ecological species Model - occupy the same niche (functional role in and ecosystem -> same species occupying multiple niches) -> many similar species occupy the similar niches -> how do we judge what a niche is, its size (qualitative data = subjective)
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Mate-recognition species model
-> hybrids can have mixed pattern -> female can just ignore the male -> not every mating event results in fertilisation -> sexual reproduction, no asexual -> pattern can be disturbed -> hard to observe -> extinct species
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Genetic species model
-> expensive and takes loads of time -> sampling can harm the organism (procedure and transporting it into the lab) -> sampling can be dangerous and hard
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DNA sequencing vs DNA profiling
DNA sequencing looking at individual bases or AA => pick areas of DNA that should be the same within the species DNA profiling looking at whole profile (pattern of sizes of DNA) => non-coding areas of DNA, identifying patterns
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Gel Electrophoresis for DNA sequencing/profiling
Both use gel electrophoresis - variation of chromatography, used to separate DNA and RNA fragments according to their size and charge (DNA has a charge - can move when a current is applied towards positive electrode and separates out across the gel - different size of DNA or different sequences of bases)
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Biodiversity
number and variety of species in an area and their genetic differences genetic diversity between individuals within the species and between diff species, as well as the variety of diff ecosystems
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Species Diversity
Species Diversity - number (species richness) and abundance (relative species abundance) of different species in an area
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Genetic Diversity
Genetic Diversity - genetic variation (variation of alleles) between members of the species
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Ecosystem Diversity
Ecosystem Diversity - variety of different habitats in an ecosystem
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Endemism
Endemism - when a species is unique to a single place (usually due to geographical isolation)
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Biodiversity Hotspots: what and why?
Biodiversity Hotspots - places with unusual biodiversity (occupy 16% of land with 77% of Earth’s vertebrate species): Very stable ecosystems allowing for endosymbiotic relationships to develop High levels of productivity (high rate of photosynthesis) can support more niches When organisms can grow and reproduce rapidly, the mutations are more likely to occur leading to adaptations allowing the organisms to exploit more niches
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Extreme environment and biodiversity
Extreme conditions mean low biodiversity => susceptible to changes, many unoccupied niches = if a new species is introduced, it can easily displace other species + overpower them when competing for food/territory, unstable ecosystems
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Most vulnerable places to loss if biodiversity
Most vulnerable places for loss of biodiversity: small isolated ecosystems such as islands, rainforests and coral reefs
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Measuring biodiversity
-> random sampling with quadrants (biodiversity) -> transect (distribution) => count the number of species in that area, scale it up to an entire area and make a table, repeat and calculate the mean
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Diversity Index
D = (N(N-1))/ (sum of n(n-1)) -> N - total number of the organisms of all species -> n - total number of organisms in each species
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Distribution and Abundance definitions
Distribution - where the species is found Abundance - ho many of each species is present (taking representative sample and multiplying out up)
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Allele Frequency
Allele Frequency - known frequency of a particular allele -> mutations increase the gene pool of the population by increasing the number of diff alleles available -> selection pressures can cause particular alleles to be selected for, which can alter the allele frequency
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Heterozygosity + its index
Heterozygosity - proportion/ percentage of genes which are present in the heterozygous form Heterozygosity Index = number of heterozygous/ total number -> what alleles can be passed on, most of the allele combinations can be made, greatest variance in the population, important during conservation efforts
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Human Impact on Biodiversity
reduce it habitat destruction (deforestation and clearing of land for industry/ farming) climate change (greenhouse effect = average temp rising) poaching (illegal trade) Building infrastructure leading to migration patterns changing invasive species
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Niche
Niche - species’ role in its community -> 2 species cannot occupy the same niche => both successful in the same ecosystem
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Ecology
Ecology - complex system of interactions between biotic and abiotic factors
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Human Impact on Biodiversity
reduce it habitat destruction (deforestation and clearing of land for industry/ farming) climate change (greenhouse effect = average temp rising) poaching (illegal trade) Building infrastructure leading to migration patterns changing invasive species
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Competition
Competition - 2 or more individuals strive to obtain the same resources when these are in short supply -> The more similar the individuals are, the more intense the competition
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Adaptations
Adaptations - organisms become specialised for the environment they live in and the niche they occupy => ensures their niches are different enough to avoid competition
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Explain why species cannot occupy the same niche (4 marks)?
Organisms will have different roles in the community. This is important when resources are in short supply (food, nesting, etc). This increases the likelihood that organisms can survive and reproduce. This would increase the allele frequency of the advantageous allele/adaptation.
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3 types of adaptations
Behavioural - programmed or instinctive actions by the organisms to help them survive and reproduce Physiological - internal workings of an organism to help them survive and reproduce Anatomical - forms and structures which can be observed when an organism is dissected
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Co-adaptation
Co-adaptation - process by which 2 or more species, traits, organs or genes undergo adaptation as a pair or a group
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Gene Pool
Gene Pool - all the alleles in a population’s genome
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Population
Population - group of individuals of the same species occupying a particular habitat and a niche
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Hardy-Weinberg Principle: assumptions
- predicts the frequency of recessive and dominant alleles in a gene pool based on assumptions Population must be large (reduced likelihood of losing alleles from gene pool) No immigration/emigration (no gene flow) Mating is random (e.g. the female wont be more likely to choose a male who has the biggest tail) No genetic mutations can occur all genotypes must be equally fertile no natural selection takes place
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Hardy-Weinberg Principle: equations
If p = frequency of dominant allele If q = frequency of recessive allele => Allele frequency ⇒ p+q = 1 => Genotype frequency ⇒ p2 + 2pq +q2 = 1 where HD = p2 where HR = q2 where Ht = 2pq
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Population
Population - group of individuals of the same species occupying a particular habitat and a niche
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Speciation
process of population species evolution to become 2 distinct species reduced gene flow Genetic Variation Natural selection Isolation (geographical/ reproductive) Hybridisation (sterile/fertile offsprings) => once they meet again, they cannot mate to produce fertile offsprings as they have different genetic material
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Allopatric Speciation due to geographical isolation
mountains ranges sea or bodies of freshwater (for terrestrial species) land (for aquatic species) glacial masses valleys
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Sympathetic Speciation
Sympathetic Speciation - reproductive isolation caused by rapid genetic change which alters: morphology behaviour habitat preference => temporal (diff species have diff breeding seasons/ time of the day) => hybrid sterility (hybrids are sterile and cannot reproduce further) => ecological (occupy diff habitats within the same location) => gamete mortality (sperm and egg cannot meet/ sperm cannot penetrate the egg’s zone pellucida) => hybrid inviability (fertilisation occurs but no embryo survives) => behavioural (diff mating rituals) => structural (sexual organs of the organisms are incompatible)
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Adaptive Radiation + Darwin’s Finches
Adaptive Radiation - when one species develops rapidly into several species which fill diff ecological niches => Darwin’s Finches (explain)
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Genetic Bottleneck
Genetic Bottleneck - population recovers from a small number of individuals -> low variation as many alleles have been lost -> unlikely to truly represent the allele frequency Sudden population reduction = unselective: Earthquakes Flood Fires Diseases Human Intervention?
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Founder Effect
Loss of genetic variation when few individuals from a population colonise a new region, leaving the main population => voluntary population bottleneck decrease in number of alleles = decrease in gene pool = decrease in genetic diversity (less likely to overcome an environment change/ selective pressure)
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Conservation: what
Keeping and protecting a living and changing environment reclaiming land after industrial use setting up sustainable agriculture systems protection of threatened species global legislations on pollution
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Human Population Explosion
- machinery for farming, medicine so more ppl survive, more trade -> Climate Change (global warming = extreme environment that some won't be able to adapt to soon enough) -> Depletion of biological resources (more demand to fulfill wants and needs, trade of resources) -> Habitat Destruction
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Ex-Situ Conservation
- conserving them outside of their natural environment (zoo/seedbank) no time to protect the habitat captive breeding programs (space and resources?, right conditions for breeding?, reintroduction to the wild is often unsuccessful (hard to adjust to unsupported life) + is expensive and time-consuming, gene pool is reduced (artificial insemination)) occurs in the country where the threatened specie originates Removing from the influence of other species => conserve genes and breeding population can be eventually returned
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Human Population Explosion
- machinery for farming, medicine so more ppl survive, more trade -> Climate Change (global warming = extreme environment that some won't be able to adapt to soon enough) -> Depletion of biological resources (more demand to fulfill wants and needs, trade of resources) -> Habitat Destruction
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Zoos
Scientific research (behaviour, reproduction, genetics) Captive breeding programmes Reintroduction programmes Education/public programmes
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Seed banks
Storage of genetic material (long-term preservation) Controlled conditions (low temp, low moisture) Can preserve many species cheaply Used for future reintroduction restoration
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Seed banks: how is it done?
Collect seeds from various parent plants to increase genetic diversity which are then washed, and dried. Screen seeds using x-rays to ensure that testa and embryo are intact Seeds must be dried and kept at -20 to -40 degrees celsius Water activates the enzymes (amylase) used in respiration + soften testa. Warm temperature increases the metabolic reactions Need starch to be present for germination
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Captive Breeding: what + disadv
Population small — gene pool is reduced. Use of stud books to track lineage (record the male) to increase the genetic diversity Too expensive, needs professionals, doesn’t always work. Transport of animals might be difficult. Limited space or not enough resources Difficult to provide conditions for breeding Animals bred in captivity have hard time adjusting to unsupported life in the wild
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In-Situ Conservation
In-Situ Conservation - conserving them in their natural environment
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Sustainability of in-situ conservation
Harvest trees selectively and replant in the future Habitat conservation (preventing deforestation) Marine parks Reintroduction programmes
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Sustainability: examples
Slash and burn deforestation => selective cutting and trees replanting Monoculture + excessive farming => organic fertilisers, pest control, planting in rotation to avoid soil exhaustion Sustainable Tourism Education on human impacts, ways to support the conservation, sustainable practices