obligate aerobic
require oxygen to grow and thrive
use oxygen for energy production and metabolism
obligate anaerobic
can grow and thrive without oxygen and may even be harmed by its presence
use alternative electron acceptors and their metabolism is less efficient
facultative
versatile/can adapt to different oxygen conditions
can grow and thrive in the presence of absence of oxygen
human gut facultative anaerobes
can thrive in the presence of oxygen in the upper intestine
switch to anaerobic metabolism in the lower intestine where oxygen levels are lower
carbohydrate fermentation tests
evaluate how a Gram negative organism generates energy from sugars and what metabolic byproducts are produced (outputs create visible changes in culture media)
what is assessed in carbohydrate fermentation testing
sugar fermentation (ex. glucose, lactose, sucrose)
acid production
gas production
high yield examples of carbohydrate fermentation testing
MacConkey agar
triple sugar iron (TSI) agar
MacConkey agar
lactose fermenter -> pink colonies
non-lactose fermenter -> colorless
Triple Sugar Iron (TSI) agar
glucose/lactose/sucrose fermentation
Gas and H2S production
serovar
short for serological variant
subcategory of bacteria that shares certain antigenic characteristic
used to classify and distinguish closely related strains of a bacterial species based on the specific antigens present on their surgaves
antigens often associated with the bacterium’s cell wall, capsule, or flagella
enterobacteriaceae
family gram-negative rods whose natural habitat is the intestinal tract
among largest bacteria
ferment glucose, reduce nitrates to nitrites, and are oxidase-negative
enteric organisms
microorganisms that primarily inhabits the GI tract
is adapted to survive in bile, variable pH, and low oxygen environments
often belongs to Gram negative rod group
enterobacteriaceae system of dividing species into serotypes
O = LPS
K = polysaccharide capsule
H = flagellar protein
O antigen
outer membrane lipopolysaccharide (LPS)
antigen specificity is determined by variation in the sugar that form the long terminal polysaccharide side chains linked to the core polysaccharide and lipid A
K antigen
cell surface polysaccharide may form a well-defined capsule or an amorphous slime layer providing protection from environmental pressures as well as host immune responses
H antigen
mobile strains have peritrichous flagella which extend well beyond the cell wall and are called the H antigen called the H protein
many have adhesive surface pili which are protein structures that extend from the bacterial cell envelope and function to attach cells to surfaces
fermenting glucose is not the same as
fermenting lactose
lactose fermentation is more specialized and unique
enterobacteriaceae genus and species designations
based on phenotypic characteristics such as patterns of carbohydrate fermentation and amino acid breakdown
O, K, and H antigens used to further divide some species into multiple serotypes/serovars/subtypes
genera containing the species most virulent for humans
Eschericheia
Shigella
Salmonella
Klebsiella
Yersinia
beta-lactams (some)
bind penicillin-binding proteins (PBPs)
block peptidoglycan cross-linking
cause osmotic lysis
why basic penicillins often don’t work against gram-negative bacteria?
unique in gram-negtivae, beta lactamases are located in the periplasmic space
places the enzyme directly between the drug and its target (PBPs)
beta-lactamase hydrolyzes the beta lactam ring before the drug can bind the PBPs and drug is inactivated prior to reaching peptidoglycan
modified beta lactams
smaller, more hydrophilic, more stable than basic penicillins
improves their ability to traverse the outer membrane
higher affinity for Gram-negative PBPs and greater resistance to degradation
advance cephalosporins, carbapenems
beta-lactamase inhibitors
clauvinic acid, taxobactam, sulbactam
function by competitively binding and inactivating beta-lactamases
protects beta lactam ABX from destruction
giving it time and concentration to bind PBPs and inhibit peptidoglycan cross linking
particularly effective against plasmid-mediated beta lactamases whcih are common among Gram negative organisms
gram negative treatment
protein synthesis inhibitors
-30S ribosomal subunit
-50S ribosomal subunit
DNA/RNA synthesis inhibitors
Cell membrane disruptors