MODULE 4 - classification and evolution Flashcards

(109 cards)

1
Q

what is taxonomy?

A

the practice of biological classification

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2
Q

what is the phylogenic biological classification system based off?

A

evolutionary origins and relationships

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3
Q

list the taxonomical groups in order

A

Kingdom Phylum Class Order Family Genus Species

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4
Q

what are the three domains?

A

eukaryota, bacteria, archae

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5
Q

which sorts of organism are sorted into eukarya

A

eukaryotic organisms

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6
Q

why is the binomial system useful?

A

they allow for species to be universally identified - the binomial for a species is the same across the entire globe - cannot be confused by language

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7
Q

how is a binomial name written?

A
  • it is always italicized in writing (or underlined if it is not possible to italicise)
  • genus is capitalised
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8
Q

how did scientists realise that prokaryotes had to be divided into two domains?

A

molecular analyses of RNA genes in particular, and by looking at features such as ribosomal RNA (rRNA), aspects of protein synthesis and the structure of cell membranes and flagella

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9
Q

describe organisms in the taxonomical group archaea in 5 points

A
  • prokaryotic
  • circular chromosomes
  • 70S ribosomes
  • has histones
  • cell walls always present but with no peptidoglycan
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10
Q

how do organisms in archaea differ from those in bacteria?

A
  • Unique lipids being found in the membranes of their cells
  • No peptidoglycan in their cell walls
  • Ribosomal structure (particularly that of the small subunit) are more similar to the eukaryotic ribosome than that of the bacteria
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11
Q

describe organisms in the taxonomical group bacteria in 6 points

A
  • prokaryotic
  • circular chromosomes
  • 70S ribosomes
  • cell walls always present with peptidoglycan
  • no histones
  • divide by binary fission
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12
Q

describe organisms in the taxonomical group eukarya in 8 points

A
  • membrane bound organelles
  • vary massively in size
  • divide by mitosis
  • can reproduce sexually or asexually
  • linear chromosomes
  • 80S ribosomes
  • has histones
  • sometimes has a cell wall but without peptidoglycan
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13
Q

how do the membrane lipids of bacteria and archaea differ?

A

archaea membrane lipids are completely unique:
- they consist of branched hydrocarbon chains bonded to glycerol by ether linkages –> the hydrocarbon chains in bacteria are unbranched

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14
Q

what are the 5 kingdoms?

A

Prokaryota
Protoctista
Fungi
Plantae
Animalia

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15
Q

what are the key features of bacteria in the Prokaryota kingdom?

A
  • Most are unicellular
  • have cells walls + cytoplasm
  • no nucleus or mitochondria
  • cells divide by binary fission
  • most are heterotrophic - can be autotrophic
  • organelles are not membrane bound
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16
Q

what is a heterotrophic organism?

A

(feeding by decomposing living or dead organic materials)

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17
Q

what are the key features of organisms in the protoctista kingdom?

A
  • can have a cell wall or no cell wall
  • eukaryotic
  • can exist as single-celled organisms or as a group of similar cells
  • Members of this kingdom show great diversity in all aspects of life including structure, life cycle, feeding and trophic levels and well as modes of locomotion
  • autotrophic and heterotrophic
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18
Q

what are the key features of organisms in the fungi kingdom?

A
  • eukaryotic
  • cells possess non-cellulose cell walls (often made of the polysaccharide chitin) + Don’t have cilia
  • heterotrophs
  • reproduce using spores
  • Some consist of long threads called hyphae that grow from the main fungus body and form a network of filaments called the mycelium
  • can be both multi or uni cellular
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19
Q

what are the key features of organisms in the plantae kingdom?

A
  • multicellular eukaryotic organisms
  • cell walls composed of cellulose
  • autotrophs
  • have complex body forms
  • Possess chloroplasts that enable photosynthesis + vacuoles
  • Are able to differentiate into specialized cells to form tissues and organs
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20
Q

what are the key features of organisms in the animalia kingdom?

A
  • multicellular eukaryotic organisms
  • can differentiate into many different specialised cell types that can form tissues and organs
  • small temporary vacuoles
  • no cell walls
  • heterotrophs
  • Communication within their complex body forms takes place through a nervous system and chemical signalling
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21
Q

what is phylogeny?

A

The evolutionary history of organisms

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22
Q

how are the evolutionary relationships of organisms shown?

A

phylogenic trees

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23
Q

which data is used to investigate evolutionary relationships?

A

DNA
mRNA
Amino acids (of a protein)

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24
Q

what is the purpose of Sequencing technology and why is it useful?

A

to determine the order of DNA bases, mRNA bases and amino acids within an organism’s genome
- useful for comparison with an extinct species (using ancient DNA) or when distinguishing between species that are very physically similar

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25
how can scientists achieve a more accurate estimate of evolutionary relatedness?
Looking at multiple proteins or multiple regions of the genome - will choose specific proteins or sections of the genome for comparison between organisms
26
on what basis are proteins chosen for evolutionary comparison?
the protein needs to be present in a wide range of organisms and show sufficient variation between species
27
why is cytochrome C used in sequencing technology?
it is an integral protein to respiration (in the electron transport chain) which is used by all eukaryotic organisms meaning it is present in a wide range of organisms
28
genetically, what proves two organisms to be more closely related?
the sequences of DNA bases, mRNA bases and amino acids are more similar
29
what do similar DNA, mRNA, and amino acid sequences suggest about an organism?
- will have separated into separate species more recently than two groups with less similarity in their sequences - closely related
30
why might the sequences of two species be different?
they have been separated for longer have had a greater amount of time to accumulate mutations and changes to their DNA,mRNA and amino acid sequences
31
how are phylogenic trees created?
Sequence analysis and comparison
32
how is a DNA comparison carried out?
- DNA is extracted from the nuclei of cells taken from an organism - The extracted DNA is processed, analysed and the base sequence is obtained - The base sequence is compared to that of other organisms to determine evolutionary relationships
33
what is evolution?
the way in which species have changed over time and continue to change
34
which key observations helped Darwin develop the theory of evolution by natural selection?
- All organisms produce more offspring than could ever actually survive - intraspecific variation - Offspring inherit characteristics from their parents
35
what are the key sources of evidence for the theory of evolution by natural selection?
Fossil evidence Molecular evidence evolutionary embryology
36
explain the fossil evidence for evolution
- simpler life forms found in older/deeper rock - the physical anatomy of fossils can be compared and studied - can compare fossils to living organisms
37
what are the downsides of the fossil record?
it is incomplete: not all fossils have been discovered + some may have been destroyed e.g. by volcanoes
38
what is a homologous structure?
a stricture in different species that seems superficially different but shares a similar underlying anatomy and developmental origin - same underlying structure
39
what do homologous structures provide evidence for?
divergent evolution
40
what is divergent evolution?
when closely related species, sharing a common ancestor, gradually develop different traits and characteristics due to adapting to different environments or ecological niches, often leading to new species (speciation) over time
41
how can we study the molecular evidence for evolution?
using comparative biochemistry
42
what is comparative biochemistry?
the study of similarities snd differences in the proteins and other molecules that control life processes
43
how can comparative biochemistry be used to identify evolutionary relationships?
- the molecular sequence of cytochrome C and rRNA (two highly conserved molecules) can be compared by looking at the order of DNA bases/amino acids in a protein
44
what is evolutionary embryology and how can it help determine evolutionary relationships?
- the study of embryos - embryos being very similar implies that animals develop in a similar way and that the processes of embryonic development have a common origin
45
what are the two types of variation?
- intraspecific - interspecific
46
what is intraspecific variation?
the differences between organisms of the same species
47
what is interspecific variation?
the differences between organisms of different species
48
the causes of variation can be...
- genetic - environmental
49
what does variation within a species allow?
natural selection to occur
50
what is discontinuous variation?
differences that fall into discrete and distinguishable categories with no intermediates - cannot be measured over a range
51
how can discontinuous variation be represented?
using a bar chart
52
what is continuous variation?
differences that show a range of values and can fall anywhere between two extremes
53
how can continuous variation be represented?
on a histogram with bars that touch each other, and will often show a characteristic bell-shaped curve
54
what are the causes of discontinuous variation?
- solely due to genetic factors: phenotype = genotype -- Different genes have different effects on the phenotype -- Different alleles at a single gene locus have a large effect on the phenotype
55
what are the causes of continuous variation?
- caused by an interaction between genetics and the environment: Phenotype = genotype + environment - Different alleles at a single locus have a small effect on the phenotype - Different genes can have the same effect on the phenotype and these add together to have an additive effect
56
what are polygenes and where do they apply?
- apply in continuous variation - they are a large number of genes that have a combined effect on the phenotype
57
how do environmental factors influence as organism?
they can affect how organisms grow and develop
58
give three examples of environmental variation
- An accident may lead to scarring on the body - Eating too much and not leading an active lifestyle will cause weight gain - Being raised in a certain country will cause you to speak a certain language with a certain accent
59
what are the genetic causes of variation?
- allele variation - mutations - meiosis: indépendant assortment and crossing over - random fertilisation - sexual reproduction: the offspring inherits random genes from each parent
60
what are the three types of adaptation?
- physiological - anatomical - behavioural
61
what are the physical features of an organism called?
anatomical
62
what are the biological processes within an organism called?
physiological
63
what is the way an organism behaves called?
behavioural
64
give 4 examples of anatomical adaptations in animals
body covering camouflage teeth mimicry
65
give 4 examples of anatomical adaptations in plants
a thick waxy cuticle sunken stomata curled leaves hairy leaves
66
what are the two types of behavioural adaptations?
- innate - instinctive - learned
67
give three examples of behavioural adaptations in animals
survival behaviours e.g. playing dead courtship seasonal behaviours e.g. migration + hibernation
68
give three examples of physiological adaptations
poison production antibiotic production water holding
69
what is convergent evolution?
how organisms from different taxonomic groups may show similar adaptations even though they do not share a recent common ancestor
70
how can convergent evolution occur by natural selection?
- two species live in different parts of the world with similar environments - the species deal with the same selection pressures - the same characteristics are advantageous in the two environments, so individuals with these characteristics are more likely to survive and reproduce - over time the advantageous characteristics become widespread in both populations
71
what is an analogous structure?
structures which have adapted to perform the same function but have a different genetic origin
72
which three animals are examples of convergent evolution and analogous structures? where are they found?
- marsupial and placental mice - flying squirrels and flying phalangers - marsupial and placental moles
73
which plants are examples of convergent evolution?
aloe and agave as they have both had to survive in the desert
74
what is genetic variation?
differences in DNA base sequences between individual organisms within a species population
75
why does there need to be some level of genetic diversity within a population for natural selection to occur?
Differences in the alleles possessed by individuals within a population result in differences in phenotypes Some phenotypes may be advantageous, disadvantageous or neutral, compared to other phenotypes
76
what is the result of selection pressures?
they increase the chance of individuals with a specific (more advantageous) phenotype surviving and reproducing over others
77
how do we describe individuals with favoured phenotypes for natural selection?
as having a higher fitness
78
what is the fitness of an organism?
The fitness of an organism is defined as its ability to survive and pass on its alleles to offspring
79
which populations have a strong ability to adapt to change?
populations with a large gene pool or high genetic diversity
80
what is the result of a population having a small gene pool or very low genetic diversity?
they are much less able to adapt to changes in the environment and so can become vulnerable to extinction
81
how do environmental factors affect the chance of survival of an organism?
they act as selection pressures
82
what is exponential growth in terms of environmental selection pressures?
when there are no environmental factors or population checks acting on the population
83
what are the main processes resulting in natural selection?
--> Random mutation can produce new alleles of a gene --> Many mutations are harmful or neutral but, under certain environmental conditions, the new alleles may benefit their possessor, leading to an increased chance of survival and increased reproductive success --> The advantageous allele is passed onto the next generation --> As a result, over several generations, the new allele will increase in frequency in the population
84
what are antibiotics?
chemical substances that inhibit or kill bacterial cells with little or no harm to human tissue
85
how might bacteria become antibiotic resistant?
- variation causes mutations - A chance mutation might cause some bacteria to become resistant to an antibiotic - When the population is treated with this antibiotic, the resistant bacteria do not die - the resistant bacteria can continue to reproduce with less competition from the non-resistant bacteria, which are now dead - Therefore the genes for antibiotic resistance are passed on with a much greater frequency to the next generation - Over time, the whole population of bacteria becomes antibiotic-resistant because the antibiotic-resistant bacteria are best suited to their environment
86
what are antibiotic resistant bacteria an example of?
evolution by natural selection
87
what are two ways in which a bacterium inherits resistance to an antibiotic?
Vertical transmission Horizontal transmission
88
describe the vertical transmission of bacteria cells (antibiotic resistance)
--> Bacteria reproduce asexually by binary fission (the DNA of the bacterial chromosome is replicated and the bacterial cell divides in two, with each daughter cell receiving a copy of the chromosome) --> Bacteria reproduce like this very rapidly (on average, every 20 minutes) --> If one bacterium contains a mutant gene that gives it antibiotic resistance, all of its descendants (millions of which can be produced in a matter of hours) will also have the antibiotic resistance --> This form of transmission enables antibiotic resistance to spread within a bacterial population
89
describe the horizontal transmission of bacteria cells (antibiotic resistance)
--> Plasmids (the small rings of DNA present in bacterial cells) often contain antibiotic-resistant genes --> These plasmids are frequently transferred between bacteria (even from one species to another) --> This occurs during conjugation (when a thin tube forms between two bacteria to allow the exchange of DNA) – DNA from the bacterial chromosome can also be transferred in this way --> In this way, a bacterium containing a mutant gene that gives it antibiotic resistance could pass this gene on to other bacteria (even those from a different species). This is how ‘superbugs’ with multiple resistance have developed (e.g. methicillin-resistant Staphylococcus aureus – MRSA) --> This form of transmission enables antibiotic resistance to spread within or between bacterial populations
90
how has antibiotic resistance arisen?
the overuse of antibiotics in situations where they were not really necessary or the incorrect use of antibiotics, for example: - For treatment of non-serious infections - Routine treatment of animals in agriculture - Failure to finish the prescribed course of antibiotics
91
what steps can be taken to reduce cases of antibiotic resistance
- Only prescribing antibiotics when absolutely necessary - Ensure patients complete courses of antibiotics - Rotate which antibiotics are used so that one type is not continuously used in the treatment of a specific disease - Hold back some antibiotics from being used at all so they are available as a 'last resort' - More investment in research into new antibiotics - Tighter controls in countries in which antibiotics are sold without a doctor’s prescription - Antibiotics not being used for viral infections
92
how do humans exert a selective pressure on the bacteria?
By using antibiotics frequently
93
what are the issues with antibiotic resistant bacteria?
- finding new antibiotics that bacteria haven't been exposed to yet is expensive and time-consuming - Some strains of bacteria can be resistant to multiple antibiotics - Commonly prescribed antibiotics are becoming less effective
94
how can the spread of already-resistant strains of bacteria be limited?
-- Ensuring good hygiene practices such as handwashing and the use of hand sanitisers (this has reduced the rates of resistant strains of bacteria, such as MRSA, in hospitals) -- Isolating infected patients to prevent the spread of resistant strains, in particular in surgical wards where MRSA can infect surgical wounds
95
what does standard deviation do?
it measures the spread of data around the mean value
96
when is standard deviation useful?
when comparing consistency between different data sets
97
when is a t-test used?
to compare the means of two sets of data and determine whether they are significantly different or not
98
what is a null hypothesis?
a statement of what we would expect if there is no significant difference between two means, and that any differences seen are due to chance
99
when can the null hypothesis be rejected?
If there is a statistically significant difference between the means of two sets of data, therefore the observation is not down to chance
100
what is the formula for degrees of freedom?
v = (n1 - 1) + (n2 - 1)
101
what can be gathered if the t value is greater than the critical value?
that any difference between the means of the two data sets is said to be statistically significant There is a less than 5 % probability that any difference is due to chance The null hypothesis can be rejected
102
what can be gathered if the t value is less than the critical value?
there is no significant difference between the means of the two data sets The probability that any difference is due to chance is higher than 5 % The null hypothesis is accepted
103
outline the steps to using a t-test to determine whether or not there is a significant difference between two data sets
Step 1: calculate the mean for each data set Step 2: calculate the standard deviation (s) for each data set Steps 3-5: use the standard deviations to complete the t test Step 6: calculate the degrees of freedom (v) for the data Step 7: determine where the t value lies in relation to values in a critical values table Step 8: draw a conclusion
104
how do we select our critical value on a table when doing a t-test?
we select the value that is both in line with our degrees of freedom value and is at a probability level of 0.05 (In biology we are looking for a less than 5 % probability)
105
when do we use spearmens rank coefficient?
when determining whether there is correlation between variables that don’t show a normal distribution
106
what are the steps to spearmans rank coefficient?
Step 1: Rank each set of data (rank 1 being the smallest data figure) Step 2: Find the difference in rank between the two species, D Step 3: Square the difference in rank, D2 Step 4: Substitute the appropriate numbers into the equation Step 5: Refer to a table that relates values of rs to probability. Look for the 0.05 probability level with n = 10 - a null hypothesis must be stated
107
what do the letters in the spearmans rank coefficient stand for?
rs = spearman’s rank coefficient D = difference in rank n = number of samples
108
how do we interpret results for the spearmans rank coefficient?
If the value calculated for Spearman’s rank is greater than the critical value for the number of samples in the data ( n ) at the 0.05 probability level (p), then the null hypothesis can be rejected, meaning there is a correlation between two variables
109
when do we reject the null hypothesis when using spearmans rank coefficient?
If the value calculated for Spearman’s rank is greater than the critical value for the number of samples in the data ( n ) at the 0.05 probability level (p)