What dictates how a protein folds into its three-dimensional structure?
folding is encoded in the amino acid sequence.
Are the forces that determine protein structure internal, external, or both?
Both – within the protein and between the protein and solvent.
What may initiate protein folding along the peptide chain?
Nucleation points at specific loci along the chain.
What must the folding process avoid to reach the native structure?
Local energy-minimum states that are not the native state.